Failed to compile with Intel compilers

[bdeonovic]

Tried compiling with intel MKL and intel compilers (not sure if issue has to do with those though). Make errored out with this:

fround.c(57): error: identifier "LONG_MAX" is undefined
      if(x < (double) LONG_MAX) { /* in <limits.h> is architecture dependent */
                      ^

compilation aborted for fround.c (code 2)
make[3]: *** [fround.o] Error 2
make[2]: *** [Rmath/src/libRmath-julia.so] Error 2
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2

[ivarne]

Which version of Julia did you try to compile? Can you provide the command you used to compile (along with Make.user or other modifications)?

[bdeonovic]

I had some extra compile flags setup from compiling a previous program that might have been the issue. I am now re-compiling without those to see if that is the issue.

I did: git clone git@github.com:JuliaLang/julia.git to get julia (I imagine that is latest development version). and then in Make.user I had:

USEICC=1
USEIFC=1
USE_INTEL_MKL=1
USE_INTEL_MKL_FFT=1
USE_INTEL_LIBM=1

and then I just typed in make.

I also ran

source /opt/intel/mkl/bin/mklvars.sh intel64 ilp64
export MKL_INTERFACE_LAYER=ILP64

[StefanKarpinski]

This is supported and @ViralBShah recently did a bunch of work to make sure it was, so please do let us know of that does or doesn't fix things. Thanks for filing the issue.

[bdeonovic]

Ran into a different error this time:

 LINK usr/bin/julia
Warning: could not import Core.eval into Main
*** glibc detected *** /Shared/Au/bdeonovic/bin/julia/usr/bin/julia: double free or corruption (out): 0x0000000000e77ad0 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x76126)[0x7f01fdf39126]
/lib64/libc.so.6(+0x78c53)[0x7f01fdf3bc53]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0x60e7b7)[0x7f01ff62d7b7]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0x634151)[0x7f01ff653151]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0xc00ae0)[0x7f01ffc1fae0]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0xc04a56)[0x7f01ffc23a56]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0xc0496a)[0x7f01ffc2396a]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0x5d7fd7)[0x7f01ff5f6fd7]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0x5d7f60)[0x7f01ff5f6f60]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0x5d7ef6)[0x7f01ff5f6ef6]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0xe1d8f)[0x7f01ff100d8f]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(jl_trampoline+0xa1)[0x7f01ff0fb8f1]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0x15943f)[0x7f01ff17843f]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(+0x1591bf)[0x7f01ff1781bf]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(jl_load+0x64)[0x7f01ff177ff4]
/Shared/Au/bdeonovic/bin/julia/usr/bin/julia[0x40229b]
/Shared/Au/bdeonovic/bin/julia/usr/bin/julia[0x402086]
/Shared/Au/bdeonovic/bin/julia/usr/bin/../lib/libjulia.so(julia_trampoline+0x90)[0x7f01ff16a960]
/Shared/Au/bdeonovic/bin/julia/usr/bin/julia[0x4016c7]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x7f01fdee1cdd]
/Shared/Au/bdeonovic/bin/julia/usr/bin/julia[0x401589]
======= Memory map: ========
00400000-0040e000 r-xp 00000000 00:30 67861883                           /Shared/Au/bdeonovic/bin/julia/usr/bin/julia
0060d000-0060f000 rw-p 0000d000 00:30 67861883                           /Shared/Au/bdeonovic/bin/julia/usr/bin/julia
00d19000-00ee2000 rw-p 00000000 00:00 0                                  [heap]
7f01f5dfb000-7f01f5e1b000 rwxp 00000000 00:00 0 
7f01f5e3b000-7f01f603d000 rw-p 00000000 00:00 0 
7f01f603d000-7f01f60bd000 rwxp 00000000 00:00 0 
7f01f60bd000-7f01f6b41000 rw-p 00000000 00:00 0 
7f01f6b41000-7f01fc9d1000 r--p 00000000 08:01 25305303                   /usr/lib/locale/locale-archive
7f01fc9d1000-7f01fca1c000 r-xp 00000000 00:96 71833308                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libintlc.so.5
7f01fca1c000-7f01fcc1b000 ---p 0004b000 00:96 71833308                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libintlc.so.5
7f01fcc1b000-7f01fcc1e000 rw-p 0004a000 00:96 71833308                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libintlc.so.5
7f01fcc1e000-7f01fcc1f000 rw-p 00000000 00:00 0 
7f01fcc1f000-7f01fcc24000 r-xp 00000000 00:96 71833312                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libirng.so
7f01fcc24000-7f01fce24000 ---p 00005000 00:96 71833312                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libirng.so
7f01fce24000-7f01fce26000 rw-p 00005000 00:96 71833312                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libirng.so
7f01fce26000-7f01fd5cc000 r-xp 00000000 00:96 71833318                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libsvml.so
7f01fd5cc000-7f01fd7cc000 ---p 007a6000 00:96 71833318                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libsvml.so
7f01fd7cc000-7f01fd7f1000 rw-p 007a6000 00:96 71833318                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libsvml.so
7f01fd7f1000-7f01fda6b000 r-xp 00000000 00:96 71833306                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libimf.so
7f01fda6b000-7f01fdc6a000 ---p 0027a000 00:96 71833306                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libimf.so
7f01fdc6a000-7f01fdcad000 rw-p 00279000 00:96 71833306                   /share/build/Intel_tree/composer_xe_2013.2.146/compiler/lib/intel64/libimf.so
7f01fdcad000-7f01fdcc2000 r-xp 00000000 08:01 20971837                   /lib64/libz.so.1.2.3
7f01fdcc2000-7f01fdec1000 ---p 00015000 08:01 20971837                   /lib64/libz.so.1.2.3
7f01fdec1000-7f01fdec2000 r--p 00014000 08:01 20971837                   /lib64/libz.so.1.2.3
7f01fdec2000-7f01fdec3000 rw-p 00015000 08:01 20971837                   /lib64/libz.so.1.2.3
7f01fdec3000-7f01fe04d000 r-xp 00000000 08:01 20971533                   /lib64/libc-2.12.so
7f01fe04d000-7f01fe24c000 ---p 0018a000 08:01 20971533                   /lib64/libc-2.12.so
7f01fe24c000-7f01fe250000 r--p 00189000 08:01 20971533                   /lib64/libc-2.12.so
7f01fe250000-7f01fe251000 rw-p 0018d000 08:01 20971533                   /lib64/libc-2.12.so
7f01fe251000-7f01fe256000 rw-p 00000000 00:00 0 
7f01fe256000-7f01fe26c000 r-xp 00000000 08:01 20971620                   /lib64/libgcc_s-4.4.6-20120305.so.1
7f01fe26c000-7f01fe46b000 ---p 00016000 08:01 20971620                   /lib64/libgcc_s-4.4.6-20120305.so.1
7f01fe46b000-7f01fe46c000 rw-p 00015000 08:01 20971620                   /lib64/libgcc_s-4.4.6-20120305.so.1
7f01fe46c000-7f01fe554000 r-xp 00000000 08:01 25306956                   /usr/lib64/libstdc++.so.6.0.13
7f01fe554000-7f01fe754000 ---p 000e8000 08:01 25306956                   /usr/lib64/libstdc++.so.6.0.13
7f01fe754000-7f01fe75b000 r--p 000e8000 08:01 25306956                   /usr/lib64/libstdc++.so.6.0.13
7f01fe75b000-7f01fe75d000 rw-p 000ef000 08:01 25306956                   /usr/lib64/libstdc++.so.6.0.13
7f01fe75d000-7f01fe772000 rw-p 00000000 00:00 0 
7f01fe772000-7f01fe7f5000 r-xp 00000000 08:01 20971541                   /lib64/libm-2.12.so
7f01fe7f5000-7f01fe9f4000 ---p 00083000 08:01 20971541                   /lib64/libm-2.12.so
7f01fe9f4000-7f01fe9f5000 r--p 00082000 08:01 20971541                   /lib64/libm-2.12.so
signal (6): Aborted
gsignal at /lib64/libc.so.6 (unknown line)
abort at /lib64/libc.so.6 (unknown line)
unknown function (ip: -34392073)
unknown function (ip: -34369242)
unknown function (ip: -34358189)
unknown function (ip: -10299465)
unknown function (ip: -10145455)
unknown function (ip: -4064544)
unknown function (ip: -4048298)
unknown function (ip: -4048534)
unknown function (ip: -10522665)
unknown function (ip: -10522784)
unknown function (ip: -10522890)
jl_generate_fptr at /Shared/Au/bdeonovic/bin/julia/src/codegen.cpp:664
jl_trampoline_compile_function at /Shared/Au/bdeonovic/bin/julia/src/builtins.c:810
unknown function (ip: -15236033)
jl_parse_eval_all at /Shared/Au/bdeonovic/bin/julia/src/toplevel.c:544
jl_load at /Shared/Au/bdeonovic/bin/julia/src/toplevel.c:580
unknown function (ip: 4203163)
unknown function (ip: 4202630)
julia_trampoline at /Shared/Au/bdeonovic/bin/julia/src/init.c:1011
unknown function (ip: 4200135)
__libc_start_main at /lib64/libc.so.6 (unknown line)
unknown function (ip: 4199817)
/bin/sh: line 1:  9332 Aborted                 /Shared/Au/bdeonovic/bin/julia/usr/bin/julia --build /Shared/Au/bdeonovic/bin/julia/usr/lib/julia/sys0 sysimg.jl
make[1]: *** [/Shared/Au/bdeonovic/bin/julia/usr/lib/julia/sys0.o] Error 134
make: *** [release] Error 2

[ViralBShah]

I will try this out. What version of the compilers and MKL are you using?

[ViralBShah]

I assume that the second time you started with a fresh clone. If not, could you do so?

[bdeonovic]

Yes with a fresh clone. I have mkl/11.0.2 and intel/13.1.0 intel compilers

[bdeonovic]

Any news?

[ViralBShah]

I have bigger problems now, which had not happened before:

icpc: command line warning #10159: invalid argument for option '-std'
icpc: command line warning #10006: ignoring unknown option '-Wcovered-switch-default'
icpc: command line warning #10006: ignoring unknown option '-Wno-maybe-uninitialized'
In file included from /home/viral/julia-icc/deps/llvm-3.3/include/llvm/Support/AlignOf.h(19),
                 from /home/viral/julia-icc/deps/llvm-3.3/include/llvm/ADT/SmallVector.h(17),
                 from /home/viral/julia-icc/deps/llvm-3.3/include/llvm/ADT/ArrayRef.h(14),
                 from /home/viral/julia-icc/deps/llvm-3.3/include/llvm/ADT/APInt.h(18),
                 from /home/viral/julia-icc/deps/llvm-3.3/include/llvm/ADT/APFloat.h(104),
                 from /home/viral/julia-icc/deps/llvm-3.3/lib/Support/APFloat.cpp(15):
/usr/include/c++/4.8/cstddef(41): catastrophic error: cannot open source file "bits/c++config.h"
  #include <bits/c++config.h>

[tkelman]

A C++0x or C++11 switch was added somewhere not that long ago, I think with Keno's LLDB or libc++ work. We're going to need to do CI with the Intel compilers somehow if we want to avoid breaking support for them.

[ViralBShah]

This fixed it. I think the machine got upgraded. But yes, in general, we probably want CI.

http://stackoverflow.com/questions/19660431/cannot-open-source-file-bits-cconfig-h-error-with-icpc

[ViralBShah]

I can confirm that everything builds with icc 14.0.1.

[nolta]

With icc 12.1.3, i get an Rmath error

mlutils.c(107): error: floating-point operation result is out of range
  double NA_REAL = ML_NAN;
                   ^

mlutils.c(108): error: floating-point operation result is out of range
  double R_PosInf = ML_POSINF, R_NegInf = ML_NEGINF;
                    ^

mlutils.c(108): error: floating-point operation result is out of range
  double R_PosInf = ML_POSINF, R_NegInf = ML_NEGINF;
                                          ^

compilation aborted for mlutils.c (code 2)
make[3]: *** [mlutils.o] Error 2
make[2]: *** [Rmath/src/libRmath-julia.so] Error 2
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2