Closed
Description
We don't have full source distribution tarballs for 1.10.0-beta1 because the following error occurs when building the documentation:
Building HTML documentation.
Installing known registries into `~/test/julia/doc/deps`
┌ Warning: The active manifest file has dependencies that were resolved with a different julia version (1.9.0-DEV). Unexpected behavior may occur.
└ @ ~/test/julia/doc/Manifest.toml:0
Installed IOCapture ─────────── v0.2.2
Installed ANSIColoredPrinters ─ v0.0.1
Installed Parsers ───────────── v2.4.0
Installed DocStringExtensions ─ v0.9.1
Installed JSON ──────────────── v0.21.3
Installed Documenter ────────── v0.27.23
Precompiling project...
7 dependencies successfully precompiled in 7 seconds
1 dependency had warnings during precompilation:
┌ Parsers [69de0a69-1ddd-5017-9359-2bf0b02dc9f0]
│ WARNING: method definition for dpeekbyte at /home/ararslan/test/julia/doc/deps/packages/Parsers/34hDN/src/utils.jl:199 declares type variable T but does not use it.
└
ERROR: LoadError: InitError: could not load library "libamd.so.3"
libsuitesparseconfig.so.7: cannot open shared object file: No such file or directory
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:117
[2] dlopen
@ Base.Libc.Libdl ./libdl.jl:116 [inlined]
[3] dlopen(s::String)
@ Base.Libc.Libdl ./libdl.jl:116
[4] __init__()
@ SuiteSparse_jll ~/test/julia/usr/share/julia/stdlib/v1.10/SuiteSparse_jll/src/SuiteSparse_jll.jl:86
[5] run_module_init(mod::Module, i::Int64)
@ Base ./loading.jl:1128
[6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1116
[7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
@ Base ./loading.jl:1061
[8] _tryrequire_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String)
@ Base ./loading.jl:1525
[9] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:1984
[10] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1806
[11] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[12] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[13] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1797
[14] macro expansion
@ Base ./loading.jl:1784 [inlined]
[15] macro expansion
@ Base ./lock.jl:267 [inlined]
[16] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1747
[17] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[18] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[19] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1740
[20] include(mod::Module, _path::String)
@ Base ./Base.jl:489
[21] include(x::String)
@ SparseArrays ~/test/julia/usr/share/julia/stdlib/v1.10/SparseArrays/src/SparseArrays.jl:6
[22] top-level scope
@ ~/test/julia/usr/share/julia/stdlib/v1.10/SparseArrays/src/SparseArrays.jl:77
[23] include
@ Base ./Base.jl:489 [inlined]
[24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2216
[25] top-level scope
@ stdin:3
during initialization of module SuiteSparse_jll
in expression starting at /home/ararslan/test/julia/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers/LibSuiteSparse.jl:1
in expression starting at /home/ararslan/test/julia/usr/share/julia/stdlib/v1.10/SparseArrays/src/SparseArrays.jl:3
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile SparseArrays [2f01184e-e22b-5df5-ae63-d93ebab69eaf] to "/home/ararslan/test/julia/doc/deps/compiled/v1.10/SparseArrays/jl_wIqmSr".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base ./loading.jl:2468
[3] compilecache
@ Base ./loading.jl:2334 [inlined]
[4] (::Base.var"#967#968"{Base.PkgId})()
@ Base ./loading.jl:1968
[5] mkpidlock(f::Base.var"#967#968"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile ~/test/julia/usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:92
[6] #mkpidlock#6
@ FileWatching.Pidfile ~/test/julia/usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:87 [inlined]
[7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
@ FileWatching.Pidfile ~/test/julia/usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:110
[8] #invokelatest#2
@ Base ./essentials.jl:889 [inlined]
[9] invokelatest
@ Base ./essentials.jl:884 [inlined]
[10] maybe_cachefile_lock(f::Base.var"#967#968"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:2898
[11] maybe_cachefile_lock
@ Base ./loading.jl:2895 [inlined]
[12] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:1964
[13] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1806
[14] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[15] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[16] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1797
[17] macro expansion
@ Base ./loading.jl:1784 [inlined]
[18] macro expansion
@ Base ./lock.jl:267 [inlined]
[19] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1747
[20] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[21] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[22] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1740
[23] eval
@ ./boot.jl:383 [inlined]
[24] top-level scope
@ ~/test/julia/doc/make.jl:227
in expression starting at /home/ararslan/test/julia/doc/make.jl:226
make[1]: *** [Makefile:47: html] Error 1
make: *** [Makefile:113: docs] Error 2
It appears the SuiteSparse libraries aren't getting their RPATH set properly:
$ ldd usr/lib/libamd.so
linux-vdso.so.1 (0x00007ffe4cff8000)
libsuitesparseconfig.so.7 => not found
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f1014670000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f101447e000)
/lib64/ld-linux-x86-64.so.2 (0x00007f10147e0000)
$ objdump -p usr/lib/libamd.so
usr/lib/libamd.so: file format elf64-x86-64
Program Header:
LOAD off 0x0000000000000000 vaddr 0x0000000000000000 paddr 0x0000000000000000 align 2**12
filesz 0x0000000000000c28 memsz 0x0000000000000c28 flags r--
LOAD off 0x0000000000001000 vaddr 0x0000000000001000 paddr 0x0000000000001000 align 2**12
filesz 0x00000000000071b1 memsz 0x00000000000071b1 flags r-x
LOAD off 0x0000000000009000 vaddr 0x0000000000009000 paddr 0x0000000000009000 align 2**12
filesz 0x0000000000001014 memsz 0x0000000000001014 flags r--
LOAD off 0x000000000000add0 vaddr 0x000000000000bdd0 paddr 0x000000000000bdd0 align 2**12
filesz 0x00000000000002e8 memsz 0x00000000000002f0 flags rw-
DYNAMIC off 0x000000000000ade0 vaddr 0x000000000000bde0 paddr 0x000000000000bde0 align 2**3
filesz 0x0000000000000200 memsz 0x0000000000000200 flags rw-
NOTE off 0x00000000000002a8 vaddr 0x00000000000002a8 paddr 0x00000000000002a8 align 2**3
filesz 0x0000000000000020 memsz 0x0000000000000020 flags r--
NOTE off 0x00000000000002c8 vaddr 0x00000000000002c8 paddr 0x00000000000002c8 align 2**2
filesz 0x0000000000000024 memsz 0x0000000000000024 flags r--
0x6474e553 off 0x00000000000002a8 vaddr 0x00000000000002a8 paddr 0x00000000000002a8 align 2**3
filesz 0x0000000000000020 memsz 0x0000000000000020 flags r--
EH_FRAME off 0x0000000000009838 vaddr 0x0000000000009838 paddr 0x0000000000009838 align 2**2
filesz 0x00000000000000d4 memsz 0x00000000000000d4 flags r--
STACK off 0x0000000000000000 vaddr 0x0000000000000000 paddr 0x0000000000000000 align 2**4
filesz 0x0000000000000000 memsz 0x0000000000000000 flags rw-
RELRO off 0x000000000000add0 vaddr 0x000000000000bdd0 paddr 0x000000000000bdd0 align 2**0
filesz 0x0000000000000230 memsz 0x0000000000000230 flags r--
Dynamic Section:
NEEDED libsuitesparseconfig.so.7
NEEDED libm.so.6
NEEDED libc.so.6
SONAME libamd.so.3
INIT 0x0000000000001000
FINI 0x00000000000081a4
INIT_ARRAY 0x000000000000bdd0
INIT_ARRAYSZ 0x0000000000000008
FINI_ARRAY 0x000000000000bdd8
FINI_ARRAYSZ 0x0000000000000008
GNU_HASH 0x00000000000002f0
STRTAB 0x00000000000006b0
SYMTAB 0x00000000000003b0
STRSZ 0x0000000000000282
SYMENT 0x0000000000000018
PLTGOT 0x000000000000c000
PLTRELSZ 0x00000000000001c8
PLTREL 0x0000000000000007
JMPREL 0x0000000000000a60
RELA 0x00000000000009b8
RELASZ 0x00000000000000a8
RELAENT 0x0000000000000018
VERNEED 0x0000000000000978
VERNEEDNUM 0x0000000000000002
VERSYM 0x0000000000000932
RELACOUNT 0x0000000000000003
Version References:
required from libm.so.6:
0x09691a75 0x00 03 GLIBC_2.2.5
required from libc.so.6:
0x09691a75 0x00 02 GLIBC_2.2.5
Possibly related to #48977, I guess?