remove deprecations and CategoricalArrays.jl dependency

NEWS.md

@@ -1,3 +1,28 @@
+# DataFrames v1.0 Release Notes
+
+## Breaking changes
+
+* No breaking changes are planned for v1.0 release
+
+## Bug fixes
+
+* fixed bug when displaying floating point columns with eltype turned off in
+  text/plain ([2542](https://github.com/JuliaData/DataFrames.jl/pull/2542))
+
+## New functionalities
+
+
+## Deprecated
+
+* all old deprecations now throw an error
+  ([#2554](https://github.com/JuliaData/DataFrames.jl/pull/2554))
+
+## Dependency changes
+
+
+## Other relevant changes
+
+
 # DataFrames v0.22 Release Notes
 
 ## Breaking changes

src/DataFrames.jl

@@ -1,7 +1,7 @@
 module DataFrames
 
 using Statistics, Printf, REPL
-using Reexport, SortingAlgorithms, Compat, Unicode, PooledArrays, CategoricalArrays
+using Reexport, SortingAlgorithms, Compat, Unicode, PooledArrays
 @reexport using Missings, InvertedIndices
 using Base.Sort, Base.Order, Base.Iterators
 using TableTraits, IteratorInterfaceExtensions

src/abstractdataframe/abstractdataframe.jl

@@ -556,16 +556,11 @@ julia> describe(df, :min, sum => :sum, cols=:x)
    1 │ x             0.1      5.5
 ```
 """
-function DataAPI.describe(df::AbstractDataFrame, stats::Union{Symbol,
-                          Pair{<:Base.Callable, <:SymbolOrString},
-                          Pair{<:SymbolOrString}}...; # TODO: remove after deprecation
-                 cols=:)
-    if any(x -> x isa Pair{<:SymbolOrString}, stats)
-        Base.depwarn("name => function order is deprecated; use function => name instead", :describe)
-    end
-    return _describe(select(df, cols, copycols=false),
-                     Any[s isa Pair{<:SymbolOrString} ? last(s) => first(s) : s for s in stats])
-end
+DataAPI.describe(df::AbstractDataFrame,
+                 stats::Union{Symbol, Pair{<:Base.Callable, <:SymbolOrString}}...;
+                 cols=:) =
+    _describe(select(df, cols, copycols=false), Any[s for s in stats])
+
 DataAPI.describe(df::AbstractDataFrame; cols=:) =
     _describe(select(df, cols, copycols=false),
               [:mean, :min, :median, :max, :nmissing, :eltype])

src/abstractdataframe/selection.jl

@@ -1,7 +1,3 @@
-# TODO:
-# * add handling of empty ByRow to filter, and select/transform/combine for GroupedDataFrame
-# * add handling of multiple column return rules for select/transform/combine for GroupedDataFrame
-
 # normalize_selection function makes sure that whatever input format of idx is it
 # will end up in one of four canonical forms
 # 1) AbstractVector{Int}

src/dataframe/dataframe.jl

@@ -337,6 +337,30 @@ function DataFrame(columns::AbstractMatrix, cnames::Symbol)
     return DataFrame(columns, gennames(size(columns, 2)), makeunique=false)
 end
 
+# Discontinued constructors
+
+DataFrame(matrix::Matrix) =
+    throw(ArgumentError("`DataFrame` constructor from a `Matrix` requires " *
+                        "passing :auto as a second argument to automatically " *
+                        "generate column names: `DataFrame(matrix, :auto)`"))
+
+DataFrame(vecs::Vector{<:AbstractVector}) =
+    throw(ArgumentError("`DataFrame` constructor from a `Vector` of vectors requires " *
+                        "passing :auto as a second argument to automatically " *
+                        "generate column names: `DataFrame(vecs, :auto)`"))
+
+DataFrame(column_eltypes::AbstractVector{T}, cnames::AbstractVector{Symbol},
+          nrows::Integer=0; makeunique::Bool=false) where T<:Type =
+    throw(ArgumentError("`DataFrame` constructor with passed eltypes is " *
+                        "deprecated. Pass explicitly created columns to a " *
+                        "`DataFrame` constructor instead."))
+
+DataFrame(column_eltypes::AbstractVector{<:Type}, cnames::AbstractVector{<:AbstractString},
+          nrows::Integer=0; makeunique::Bool=false) where T<:Type =
+    throw(ArgumentError("`DataFrame` constructor with passed eltypes is " *
+                        "deprecated. Pass explicitly created columns to a " *
+                        "`DataFrame` constructor instead."))
+
 
 ##############################################################################
 ##
@@ -484,17 +508,6 @@ Base.getindex(df::DataFrame, row_ind::typeof(!),
 ##
 ##############################################################################
 
-function nextcolname(df::DataFrame)
-    col = Symbol(string("x", ncol(df) + 1))
-    hasproperty(df, col) || return col
-    i = 1
-    while true
-        col = Symbol(string("x", ncol(df) + 1, "_", i))
-        hasproperty(df, col) || return col
-        i += 1
-    end
-end
-
 # Will automatically add a new column if needed
 function insert_single_column!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)
     if ncol(df) != 0 && nrow(df) != length(v)
@@ -524,18 +537,6 @@ function insert_single_entry!(df::DataFrame, v::Any, row_ind::Integer, col_ind::
     end
 end
 
-function insert_multiple_entries!(df::DataFrame,
-                                  v::Any,
-                                  row_inds::AbstractVector,
-                                  col_ind::ColumnIndex)
-    if haskey(index(df), col_ind)
-        _columns(df)[index(df)[col_ind]][row_inds] .= v
-        return v
-    else
-        throw(ArgumentError("Cannot assign to non-existent column: $col_ind"))
-    end
-end
-
 # df[!, SingleColumnIndex] = AbstractVector
 function Base.setindex!(df::DataFrame, v::AbstractVector, ::typeof(!), col_ind::ColumnIndex)
     insert_single_column!(df, v, col_ind)

src/deprecated.jl

@@ -1,147 +1,10 @@
-import Base: @deprecate
+# commenting out till we decide to start deprecating things again
 
-@deprecate DataFrame!(args...; kwargs...) DataFrame(args...; copycols=false, kwargs...)
+# import Base: @deprecate
 
 # TODO: remove these definitions in year 2021
 by(args...; kwargs...) = throw(ArgumentError("by function was removed from DataFrames.jl. " *
                                              "Use the `combine(groupby(...), ...)` or `combine(f, groupby(...))` instead."))
 
 aggregate(args...; kwargs...) = throw(ArgumentError("aggregate function was removed from DataFrames.jl. " *
                                                     "Use the `combine` function instead."))
-
-export categorical, categorical!
-function CategoricalArrays.categorical(df::AbstractDataFrame,
-                                       cols::Union{ColumnIndex, MultiColumnIndex};
-                                       compress::Union{Bool, Nothing}=nothing)
-    if compress === nothing
-        compress = false
-        categoricalstr = "categorical"
-    else
-        categoricalstr = "(x -> categorical(x, compress=$compress))"
-    end
-    if cols isa AbstractVector{<:Union{AbstractString, Symbol}}
-        Base.depwarn("`categorical(df, cols)` is deprecated. " *
-                     "Use `transform(df, cols .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical)
-        return transform(df, cols .=> (x -> categorical(x, compress=compress)), renamecols=false)
-    elseif cols isa Union{AbstractString, Symbol}
-        Base.depwarn("`categorical(df, cols)` is deprecated. " *
-                     "Use `transform(df, cols => $categoricalstr, renamecols=false)` instead.",
-                     :categorical)
-        return transform(df, cols => (x -> categorical(x, compress=compress)), renamecols=false)
-    else
-        Base.depwarn("`categorical(df, cols)` is deprecated. " *
-                     "Use `transform(df, names(df, cols) .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical)
-        return transform(df, names(df, cols) .=> (x -> categorical(x, compress=compress)), renamecols=false)
-    end
-end
-
-function CategoricalArrays.categorical(df::AbstractDataFrame,
-                                       cols::Union{Type, Nothing}=nothing;
-                                       compress::Bool=false)
-    if compress === nothing
-        compress = false
-        categoricalstr = "categorical"
-    else
-        categoricalstr = "categorical(x, compress=$compress)"
-    end
-    if cols === nothing
-        cols = Union{AbstractString, Missing}
-        Base.depwarn("`categorical(df)` is deprecated. " *
-                     "Use `transform(df, names(df, $cols) .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical)
-    else
-        Base.depwarn("`categorical(df, T)` is deprecated. " *
-                     "Use transform(df, names(df, T) .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical)
-    end
-    return transform(df, names(df, cols) .=> (x -> categorical(x, compress=compress)), renamecols=false)
-end
-
-function categorical!(df::DataFrame, cols::Union{ColumnIndex, MultiColumnIndex};
-                      compress::Union{Bool, Nothing}=nothing)
-    if compress === nothing
-        compress = false
-        categoricalstr = "categorical"
-    else
-        categoricalstr = "(x -> categorical(x, compress=$compress))"
-    end
-    if cols isa AbstractVector{<:Union{AbstractString, Symbol}}
-        Base.depwarn("`categorical!(df, cols)` is deprecated. " *
-                     "Use `transform!(df, cols .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical!)
-        return transform!(df, cols .=> (x -> categorical(x, compress=compress)), renamecols=false)
-    elseif cols isa Union{AbstractString, Symbol}
-        Base.depwarn("`categorical!(df, cols)` is deprecated. " *
-                     "Use `transform!(df, cols => $categoricalstr, renamecols=false)` instead.",
-                     :categorical!)
-        return transform!(df, cols => (x -> categorical(x, compress=compress)), renamecols=false)
-    else
-        Base.depwarn("`categorical!(df, cols)` is deprecated. " *
-                     "Use `transform!(df, names(df, cols) .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical!)
-        return transform!(df, names(df, cols) .=> (x -> categorical(x, compress=compress)), renamecols=false)
-    end
-end
-
-function categorical!(df::DataFrame, cols::Union{Type, Nothing}=nothing;
-                      compress::Bool=false)
-    if compress === nothing
-        compress = false
-        categoricalstr = "categorical"
-    else
-        categoricalstr = "(x -> categorical(x, compress=$compress))"
-    end
-    if cols === nothing
-        cols = Union{AbstractString, Missing}
-        Base.depwarn("`categorical!(df)` is deprecated. " *
-                     "Use `transform!(df, names(df, $cols) .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical!)
-    else
-        Base.depwarn("`categorical!(df, T)` is deprecated. " *
-                     "Use `transform!(df, names(df, T) .=> $categoricalstr, renamecols=false)` instead.",
-                     :categorical!)
-    end
-    return transform!(df, names(df, cols) .=> (x -> categorical(x, compress=compress)), renamecols=false)
-end
-
-@deprecate DataFrame(pairs::NTuple{N, Pair}; makeunique::Bool=false,
-          copycols::Bool=true) where {N} DataFrame(pairs..., makeunique=makeunique, copycols=copycols)
-@deprecate DataFrame(columns::NTuple{N, AbstractVector}, cnames::NTuple{N, Symbol}; makeunique::Bool=false,
-          copycols::Bool=true) where {N} DataFrame(collect(columns), collect(cnames);
-              makeunique=makeunique, copycols=copycols)
-@deprecate DataFrame(columns::NTuple{N, AbstractVector}, cnames::NTuple{N, AbstractString}; makeunique::Bool=false,
-                     copycols::Bool=true) where {N} DataFrame(collect(columns), [Symbol(c) for c in cnames];
-                                                              makeunique=makeunique, copycols=copycols)
-@deprecate DataFrame(columns::NTuple{N, AbstractVector};
-                     copycols::Bool=true) where {N} DataFrame(collect(columns),
-                                                              Symbol.(:x, 1:length(columns)), copycols=copycols)
-
-# this deprecation is very important, becuase without it users will
-# get strange results with old code as described in https://github.com/JuliaData/Tables.jl/issues/208
-@deprecate DataFrame(columns::AbstractVector{<:AbstractVector}; makeunique::Bool=false,
-                     copycols::Bool=true) DataFrame(columns, :auto, copycols=copycols)
-
-@deprecate DataFrame(columns::AbstractMatrix) DataFrame(columns, :auto)
-
-function DataFrame(column_eltypes::AbstractVector{T}, cnames::AbstractVector{Symbol},
-                   nrows::Integer=0; makeunique::Bool=false)::DataFrame where T<:Type
-    Base.depwarn("`DataFrame` constructor with passed eltypes is deprecated. " *
-                 "Pass explicitly created columns to a `DataFrame` constructor instead.",
-                     :DataFrame)
-    columns = AbstractVector[elty >: Missing ?
-                             fill!(Tables.allocatecolumn(elty, nrows), missing) :
-                             Tables.allocatecolumn(elty, nrows)
-                             for elty in column_eltypes]
-    return DataFrame(columns, Index(convert(Vector{Symbol}, cnames),
-                     makeunique=makeunique), copycols=false)
-end
-
-DataFrame(column_eltypes::AbstractVector{<:Type},
-          cnames::AbstractVector{<:AbstractString},
-          nrows::Integer=0; makeunique::Bool=false) =
-    DataFrame(column_eltypes, Symbol.(cnames), nrows; makeunique=makeunique)
-
-import Base: convert
-@deprecate convert(::Type{DataFrame}, A::AbstractMatrix) DataFrame(Tables.table(A, header=Symbol.(:x, axes(A, 2))))

test/constructors.jl

@@ -355,4 +355,13 @@ end
 
 end
 
+@testset "removed constructors" begin
+    @test_throws ArgumentError DataFrame([1 2; 3 4])
+    @test_throws ArgumentError DataFrame([[1 2], [3 4]])
+    @test_throws ArgumentError DataFrame([Int, Float64], [:a, :b])
+    @test_throws ArgumentError DataFrame([Int, Float64], [:a, :b], 2)
+    @test_throws ArgumentError DataFrame([Int, Float64], ["a", "b"])
+    @test_throws ArgumentError DataFrame([Int, Float64], ["a", "b"], 2)
+end
+
 end # module

test/dataframe.jl

@@ -669,6 +669,7 @@ end
           DataFrame(variable=:a, min=1, min2=1, max2=2, max=2)
 
     @test_throws ArgumentError describe(df, :mean, :all)
+    @test_throws MethodError describe(DataFrame(a=[1, 2]), cols = :a, "max2" => maximum)
 end
 
 @testset "append!" begin