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precompile problem julia 1.8.5 LinuxMint #222

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precompile problem julia 1.8.5 LinuxMint#222

Description

@sylviankahane
sylviankahane
opened on Mar 6, 2023

in expression starting at /home/sylvian/.julia/packages/DecisionTree/4lZKc/src/abstract_trees.jl:18
in expression starting at /home/sylvian/.julia/packages/DecisionTree/4lZKc/src/DecisionTree.jl:1
in expression starting at stdin:1
ERROR: LoadError: Failed to precompile DecisionTree [7806a523-6efd-50cb-b5f6-3fa6f1930dbb] to /home/sylvian/.julia/compiled/v1.8/DecisionTree/jl_V9rnlb.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base ./loading.jl:1707
[3] compilecache
@ ./loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base ./loading.jl:1200
[6] macro expansion
@ ./loading.jl:1180 [inlined]
[7] macro expansion
@ ./lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1144
[9] include
@ ./Base.jl:419 [inlined]
[10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base ./loading.jl:1554
[11] top-level scope
@ stdin:1
in expression starting at /home/sylvian/.julia/packages/MLJDecisionTreeInterface/cIWGa/src/MLJDecisionTreeInterface.jl:1
in expression starting at stdin:1

And, as a result, also

precompile
Precompiling project...
✗ Regression
✗ DecisionTree
✗ MLJDecisionTreeInterface
0 dependencies successfully precompiled in 7 seconds. 623 already precompiled.

ERROR: The following 3 direct dependencies failed to precompile:

Regression [ad671207-3d6e-4f7b-a33a-6fade53e05dd]

Failed to precompile Regression [ad671207-3d6e-4f7b-a33a-6fade53e05dd] to /home/sylvian/.julia/compiled/v1.8/Regression/jl_4dF8NH.
ERROR: LoadError: ArgumentError: Package Regression does not have Reexport in its dependencies:

  • You may have a partially installed environment. Try Pkg.instantiate()
    to ensure all packages in the environment are installed.
  • Or, if you have Regression checked out for development and have
    added Reexport as a dependency but haven't updated your primary
    environment's manifest file, try Pkg.resolve().
  • Otherwise you may need to report an issue with Regression
    Stacktrace:
    [1] macro expansion
    @ ./loading.jl:1167 [inlined]
    [2] macro expansion
    @ ./lock.jl:223 [inlined]
    [3] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1144
    [4] include
    @ ./Base.jl:419 [inlined]
    [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
    @ Base ./loading.jl:1554
    [6] top-level scope
    @ stdin:1
    in expression starting at /home/sylvian/JULIASTUFF/DataAnalysis/PredictiveModeling_withPython/Regression/src/Regression.jl:1
    in expression starting at stdin:1

DecisionTree [7806a523-6efd-50cb-b5f6-3fa6f1930dbb]

Failed to precompile DecisionTree [7806a523-6efd-50cb-b5f6-3fa6f1930dbb] to /home/sylvian/.julia/compiled/v1.8/DecisionTree/jl_LqYqb1.
ERROR: LoadError: UndefVarError: AbstractNode not defined
Stacktrace:
[1] getproperty(x::Module, f::Symbol)
@ Base ./Base.jl:31
[2] top-level scope
@ ~/.julia/packages/DecisionTree/4lZKc/src/abstract_trees.jl:18
[3] include(mod::Module, _path::String)
@ Base ./Base.jl:419
[4] include(x::String)
@ DecisionTree ~/.julia/packages/DecisionTree/4lZKc/src/DecisionTree.jl:1
[5] top-level scope
@ ~/.julia/packages/DecisionTree/4lZKc/src/DecisionTree.jl:84
[6] include
@ ./Base.jl:419 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base ./loading.jl:1554
[8] top-level scope
@ stdin:1
in expression starting at /home/sylvian/.julia/packages/DecisionTree/4lZKc/src/abstract_trees.jl:18
in expression starting at /home/sylvian/.julia/packages/DecisionTree/4lZKc/src/DecisionTree.jl:1
in expression starting at stdin:1

MLJDecisionTreeInterface [c6f25543-311c-4c74-83dc-3ea6d1015661]

Failed to precompile MLJDecisionTreeInterface [c6f25543-311c-4c74-83dc-3ea6d1015661] to /home/sylvian/.julia/compiled/v1.8/MLJDecisionTreeInterface/jl_jW7eB9.
ERROR: LoadError: UndefVarError: AbstractNode not defined
Stacktrace:
[1] getproperty(x::Module, f::Symbol)
@ Base ./Base.jl:31
[2] top-level scope
@ ~/.julia/packages/DecisionTree/4lZKc/src/abstract_trees.jl:18
[3] include(mod::Module, _path::String)
@ Base ./Base.jl:419
[4] include(x::String)
@ DecisionTree ~/.julia/packages/DecisionTree/4lZKc/src/DecisionTree.jl:1
[5] top-level scope
@ ~/.julia/packages/DecisionTree/4lZKc/src/DecisionTree.jl:84
[6] include
@ ./Base.jl:419 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base ./loading.jl:1554
[8] top-level scope
@ stdin:1
in expression starting at /home/sylvian/.julia/packages/DecisionTree/4lZKc/src/abstract_trees.jl:18
in expression starting at /home/sylvian/.julia/packages/DecisionTree/4lZKc/src/DecisionTree.jl:1
in expression starting at stdin:1
ERROR: LoadError: Failed to precompile DecisionTree [7806a523-6efd-50cb-b5f6-3fa6f1930dbb] to /home/sylvian/.julia/compiled/v1.8/DecisionTree/jl_HQmLRd.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base ./loading.jl:1707
[3] compilecache
@ ./loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base ./loading.jl:1200
[6] macro expansion
@ ./loading.jl:1180 [inlined]
[7] macro expansion
@ ./lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1144
[9] include
@ ./Base.jl:419 [inlined]
[10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base ./loading.jl:1554
[11] top-level scope
@ stdin:1
in expression starting at /home/sylvian/.julia/packages/MLJDecisionTreeInterface/cIWGa/src/MLJDecisionTreeInterface.jl:1
in expression starting at stdin:1

Activity

  1. ablaom commented on Mar 6, 2023

    @ablaom
    ablaom
    on Mar 6, 2023
    Member

    Thanks @sylviankahane for reporting.

    ERROR: LoadError: UndefVarError: AbstractNode not defined

    My guess is that the version of AbstractTrees.jl in your package environment is not recent enough to be compatible with the version of DecisionTree you are using. You need the very latest version, 0.4.3.

    To help diagnose, please report the output of using Pkg; Pkg.status() and Pkg.status(mode=Pkg.PKGMODE_MANIFEST).

    In the meantime, you may want to try creating a fresh package environment, in a new Julia session, with Pkg.activate("my_new_env", shared=true) and adding just DecisionTree (with Pkg.add("DecisionTree")) and any other packages you absolutely need for your current project, and see if that resolves your issue. If you are a new user, I encourage you to read the pkg management docs.

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