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Fourier analysis of neuron activity data. Identify neuron associated with periodic perturbation.

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JingpinLiu/Fourier

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PROJECT IS STILL IN PROGRESS

Fourier-Transform Decoding of Periodic Neural Dynamics (Project Page)

This repository showcases my summer research project analyzing zebrafish calcium imaging with a Fourier-based pipeline to detect stimulus-locked neurons under periodic perturbations.

Live Project Page: (will appear after enabling GitHub Pages)
Manuscript PDF: See the project page or docs/assets/manuscript.pdf

Highlights

  • Fourier pipeline extracts amplitude & phase at the known stimulus frequency.
  • Captures transient onset/offset responses that regression may miss.
  • Reproduces/analyzes a public zebrafish dataset; compares with regression-based labeling.

Repo Structure

  • docs/ — the GitHub Pages site
  • demo/ — analysis code (Python)
  • notebooks/ — Jupyter notebooks (exploratory / figures)
  • images/ — images used on the page
  • data/ — small samples or instructions to download data

Citation

If you use or discuss this work, please cite the repository.

License

  • Code: MIT (see LICENSE).
  • Text/figures: CC BY 4.0.

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Fourier analysis of neuron activity data. Identify neuron associated with periodic perturbation.

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