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Open "near-by" .bib file #20552

Open "near-by" .bib file

Open "near-by" .bib file #20552

Workflow file for this run

name: Deployment
on:
push:
branches:
- main
- main-release
paths-ignore:
- 'docs/**'
- 'src/test/**'
- 'README.md'
tags:
- '*'
pull_request:
merge_group:
workflow_dispatch:
inputs:
notarization:
type: boolean
required: false
default: false
env:
SpringerNatureAPIKey: ${{ secrets.SpringerNatureAPIKey }}
AstrophysicsDataSystemAPIKey: ${{ secrets.AstrophysicsDataSystemAPIKey }}
IEEEAPIKey: ${{ secrets.IEEEAPIKey }}
BiodiversityHeritageApiKey: ${{ secrets.BiodiversityHeritageApiKey}}
OSXCERT: ${{ secrets.OSX_SIGNING_CERT }}
GRADLE_OPTS: -Xmx4g -Dorg.gradle.vfs.watch=false
JAVA_OPTS: -Xmx4g
concurrency:
group: "${{ github.workflow }}-${{ github.head_ref || github.ref }}"
cancel-in-progress: true
jobs:
build:
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest, macos-13]
include:
- os: ubuntu-latest
displayName: linux
archivePortable: tar -c -C build/distribution JabRef | pigz --rsyncable > build/distribution/JabRef-portable_linux.tar.gz && rm -R build/distribution/JabRef
- os: windows-latest
displayName: windows
archivePortable: 7z a -r build/distribution/JabRef-portable_windows.zip ./build/distribution/JabRef && rm -R build/distribution/JabRef
- os: macos-13 # intel image
displayName: macOS
runs-on: ${{ matrix.os }}
outputs:
major: ${{ steps.gitversion.outputs.Major }}
minor: ${{ steps.gitversion.outputs.Minor }}
branchname: ${{ steps.gitversion.outputs.branchName }}
name: ${{ matrix.displayName }} installer and portable version
steps:
- name: Check secrets presence
id: checksecrets
shell: bash
run: |
if [ "$BUILDJABREFPRIVATEKEY" == "" ]; then
echo "secretspresent=NO" >> $GITHUB_OUTPUT
echo "❌ Secret BUILDJABREFPRIVATEKEY not present"
else
echo "secretspresent=YES" >> $GITHUB_OUTPUT
echo "✔️ Secret BUILDJABREFPRIVATEKEY present"
fi
env:
BUILDJABREFPRIVATEKEY: ${{ secrets.buildJabRefPrivateKey }}
- name: Fetch all history for all tags and branches
uses: actions/checkout@v4
with:
fetch-depth: 0
submodules: 'true'
show-progress: 'false'
- name: Install pigz and cache (linux)
if: (matrix.os == 'ubuntu-latest')
uses: awalsh128/cache-apt-pkgs-action@latest
with:
packages: pigz
version: 1.0
- name: Install GitVersion
uses: gittools/actions/gitversion/setup@v3.0.0
with:
versionSpec: "5.x"
- name: Run GitVersion
id: gitversion
uses: gittools/actions/gitversion/execute@v3.0.0
- name: Setup JDK
uses: actions/setup-java@v4
with:
java-version: 23.0.1
distribution: 'temurin'
- name: Setup Gradle
uses: gradle/actions/setup-gradle@v4
with:
gradle-home-cache-cleanup: true
- name: Prepare merged jars and modules dir (macOS)
# prepareModulesDir is executing a build, which should run through even if no upload to builds.jabref.org is made
if: (matrix.os == 'macos-13') || (steps.checksecrets.outputs.secretspresent == 'NO')
run: ./gradlew -i -PprojVersion="${{ steps.gitversion.outputs.AssemblySemVer }}" -PprojVersionInfo="${{ steps.gitversion.outputs.InformationalVersion }}" prepareModulesDir
- name: Setup macOS key chain
if: (matrix.os == 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
uses: slidoapp/import-codesign-certs@1923310662e8682dd05b76b612b53301f431cd5d
with:
p12-file-base64: ${{ secrets.OSX_SIGNING_CERT }}
p12-password: ${{ secrets.OSX_CERT_PWD }}
keychain-password: jabref
- name: Setup macOS key chain for app id cert
if: (matrix.os == 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
uses: slidoapp/import-codesign-certs@1923310662e8682dd05b76b612b53301f431cd5d
with:
p12-file-base64: ${{ secrets.OSX_SIGNING_CERT_APPLICATION }}
p12-password: ${{ secrets.OSX_CERT_PWD }}
create-keychain: false
keychain-password: jabref
- name: Build dmg (macOS)
if: (matrix.os == 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: |
jpackage \
--module org.jabref/org.jabref.Launcher \
--module-path ${{env.JAVA_HOME}}/jmods/:build/jlinkbase/jlinkjars \
--add-modules org.jabref,org.jabref.merged.module \
--add-modules jdk.incubator.vector \
--dest build/distribution \
--app-content buildres/mac/jabrefHost.py \
--app-content buildres/mac/native-messaging-host \
--name JabRef \
--app-version ${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }} \
--verbose \
--mac-sign \
--vendor "JabRef e.V." \
--mac-package-identifier JabRef \
--mac-package-name JabRef \
--type dmg --mac-signing-key-user-name "JabRef e.V. (6792V39SK3)" \
--mac-package-signing-prefix org.jabref \
--mac-entitlements buildres/mac/jabref.entitlements \
--icon src/main/resources/icons/jabref.icns \
--resource-dir buildres/mac \
--file-associations buildres/mac/bibtexAssociations.properties \
--jlink-options --bind-services \
--java-options --add-exports=javafx.base/com.sun.javafx.event=org.jabref.merged.module \
--java-options --add-exports=javafx.controls/com.sun.javafx.scene.control=org.jabref.merged.module \
--java-options --add-opens=javafx.graphics/javafx.scene=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/javafx.scene.control.skin=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
--java-options --add-exports=javafx.base/com.sun.javafx.event=org.jabref \
--java-options --add-exports=javafx.controls/com.sun.javafx.scene.control=org.jabref \
--java-options --add-opens=javafx.graphics/javafx.scene=org.jabref \
--java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
--java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref \
--java-options --add-opens=javafx.base/javafx.collections=org.jabref \
--java-options --add-opens=javafx.base/javafx.collections.transformation=org.jabref \
--java-options --add-modules=jdk.incubator.vector
- name: Build pkg (macOS)
if: (matrix.os == 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: |
jpackage \
--module org.jabref/org.jabref.Launcher \
--module-path ${{env.JAVA_HOME}}/jmods/:build/jlinkbase/jlinkjars \
--add-modules org.jabref,org.jabref.merged.module \
--add-modules jdk.incubator.vector \
--dest build/distribution \
--app-content buildres/mac/jabrefHost.py \
--app-content buildres/mac/native-messaging-host \
--name JabRef \
--app-version ${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }} \
--verbose \
--mac-sign \
--vendor "JabRef e.V." \
--mac-package-identifier JabRef \
--mac-package-name JabRef \
--type pkg --mac-signing-key-user-name "JabRef e.V. (6792V39SK3)" \
--mac-package-signing-prefix org.jabref \
--mac-entitlements buildres/mac/jabref.entitlements \
--icon src/main/resources/icons/jabref.icns \
--resource-dir buildres/mac \
--file-associations buildres/mac/bibtexAssociations.properties \
--jlink-options --bind-services \
--java-options --add-exports=javafx.base/com.sun.javafx.event=org.jabref.merged.module \
--java-options --add-exports=javafx.controls/com.sun.javafx.scene.control=org.jabref.merged.module \
--java-options --add-opens=javafx.graphics/javafx.scene=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/javafx.scene.control.skin=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref.merged.module \
--java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
--java-options --add-exports=javafx.base/com.sun.javafx.event=org.jabref \
--java-options --add-exports=javafx.controls/com.sun.javafx.scene.control=org.jabref \
--java-options --add-opens=javafx.graphics/javafx.scene=org.jabref \
--java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
--java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref \
--java-options --add-opens=javafx.base/javafx.collections=org.jabref \
--java-options --add-opens=javafx.base/javafx.collections.transformation=org.jabref \
--java-options --add-modules=jdk.incubator.vector
- name: Build runtime image and installer (linux, Windows)
if: (matrix.os != 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: ./gradlew -i -PprojVersion="${{ steps.gitversion.outputs.AssemblySemVer }}" -PprojVersionInfo="${{ steps.gitversion.outputs.InformationalVersion }}" jpackage jlinkZip
- name: Package application image (linux, Windows)
if: (matrix.os != 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: ${{ matrix.archivePortable }}
- name: Rename files
if: (matrix.os != 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
shell: pwsh
run: |
get-childitem -Path build/distribution/* | rename-item -NewName {$_.name -replace "${{ steps.gitversion.outputs.AssemblySemVer }}","${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}"}
get-childitem -Path build/distribution/* | rename-item -NewName {$_.name -replace "portable","${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}-portable"}
- name: Repack deb file for Debian
if: (matrix.os == 'ubuntu-latest') && (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: |
cd build/distribution
ar x jabref_${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}_amd64.deb
zstd -d < control.tar.zst | xz > control.tar.xz
zstd -d < data.tar.zst | xz > data.tar.xz
ar -m -c -a sdsd jabref_${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}_amd64_repackaged.deb debian-binary control.tar.xz data.tar.xz
rm debian-binary control.tar.* data.tar.*
mv -f jabref_${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}_amd64_repackaged.deb jabref_${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}_amd64.deb
- name: Setup rsync (macOS)
if: ${{ (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && (steps.checksecrets.outputs.secretspresent == 'YES') && ((matrix.os == 'macos-13') && !((startsWith(github.ref, 'refs/tags/') || inputs.notarization == true))) }}
run: brew install rsync
- name: Setup rsync (Windows)
if: (matrix.os == 'windows-latest') && (steps.checksecrets.outputs.secretspresent == 'YES') && (!startsWith(github.ref, 'refs/heads/gh-readonly-queue'))
# We want to have rsync available at this place to avoid uploading and downloading from GitHub artifact store (taking > 5 minutes in total)
# We cannot use "action-rsyncer", because that requires Docker which is unavailable on Windows
# We cannot use "setup-rsync", because that does not work on Windows
# We do not use egor-tensin/setup-cygwin@v4, because it replaces the default shell
run: choco install --no-progress rsync
- name: Setup SSH key
if: ${{ (steps.checksecrets.outputs.secretspresent == 'YES') && (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && ((matrix.os != 'macos-13') || !((startsWith(github.ref, 'refs/tags/') || (inputs.notarization == true)))) }}
run: |
echo "${{ secrets.buildJabRefPrivateKey }}" > sshkey
chmod 600 sshkey
- name: Upload to builds.jabref.org (Windows)
if: (matrix.os == 'windows-latest') && (steps.checksecrets.outputs.secretspresent == 'YES') && (!startsWith(github.ref, 'refs/heads/gh-readonly-queue'))
shell: cmd
# for rsync installed by chocolatey, we need the ssh.exe delivered with that installation
run: |
rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'C:\ProgramData\chocolatey\lib\rsync\tools\bin\ssh.exe -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ jrrsync@build-upload.jabref.org:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/ || true
- name: Upload to builds.jabref.org (linux, macOS)
# macOS: Negated condition of "Upload to GitHub workflow artifacts store (macOS)"
# Reason: We either upload the non-notarized files - or notarize the files later (and upload these later)
# needs to be on one line; multi line does not work
if: ${{ (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && (steps.checksecrets.outputs.secretspresent == 'YES') && ((matrix.os == 'ubuntu-latest') || ((matrix.os == 'macos-13') && !((startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)))) }}
shell: bash
run: |
rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ jrrsync@build-upload.jabref.org:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/ || true
- name: Upload to GitHub workflow artifacts store (macOS)
if: (matrix.os == 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES') && (startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)
uses: actions/upload-artifact@v4
with:
# tbn = to-be-notarized
name: JabRef-macOS-tbn
path: build/distribution
compression-level: 0 # no compression
- name: Upload to GitHub workflow artifacts store
if: (steps.checksecrets.outputs.secretspresent != 'YES')
uses: actions/upload-artifact@v4
with:
name: JabRef-${{ matrix.os }}
path: build/distribution
compression-level: 0 # no compression
announce:
name: Comment on pull request
runs-on: ubuntu-latest
needs: [build]
if: ${{ github.event_name == 'pull_request' }}
steps:
- name: Check secrets presence
id: checksecrets
shell: bash
run: |
if [ "$BUILDJABREFPRIVATEKEY" == "" ]; then
echo "secretspresent=NO" >> $GITHUB_OUTPUT
echo "❌ Secret BUILDJABREFPRIVATEKEY not present"
else
echo "secretspresent=YES" >> $GITHUB_OUTPUT
echo "✔️ Secret BUILDJABREFPRIVATEKEY present"
fi
env:
BUILDJABREFPRIVATEKEY: ${{ secrets.buildJabRefPrivateKey }}
- name: Comment PR
if: (steps.checksecrets.outputs.secretspresent == 'YES')
uses: thollander/actions-comment-pull-request@v3
with:
message: |
The build of this PR is available at <https://builds.jabref.org/pull/${{ github.event.pull_request.number }}/merge>.
comment-tag: download-link
mode: recreate
notarize: # outsourced in a separate job to be able to rerun if this fails for timeouts
name: macOS notarization
runs-on: macos-13
needs: [build]
if: ${{ startsWith(github.ref, 'refs/tags/') || inputs.notarization == true }}
steps:
- name: Check secrets presence
id: checksecrets
shell: bash
run: |
if [ "$BUILDJABREFPRIVATEKEY" == "" ]; then
echo "secretspresent=NO" >> $GITHUB_OUTPUT
echo "❌ Secret BUILDJABREFPRIVATEKEY not present"
else
echo "secretspresent=YES" >> $GITHUB_OUTPUT
echo "✔️ Secret BUILDJABREFPRIVATEKEY present"
fi
env:
BUILDJABREFPRIVATEKEY: ${{ secrets.buildJabRefPrivateKey }}
- name: Download from GitHub workflow artifacts store (macOS)
if: (steps.checksecrets.outputs.secretspresent == 'YES')
uses: actions/download-artifact@master
with:
name: JabRef-macOS-tbn
path: build/distribution/
- name: Notarize dmg
if: (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: |
xcrun notarytool store-credentials "notarytool-profile" --apple-id "vorstand@jabref.org" --team-id "6792V39SK3" --password "${{ secrets.OSX_NOTARIZATION_APP_PWD }}"
xcrun notarytool submit build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}.dmg --keychain-profile "notarytool-profile" --wait
xcrun stapler staple build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}.dmg
- name: Notarize pkg
if: (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: |
xcrun notarytool store-credentials "notarytool-profile" --apple-id "vorstand@jabref.org" --team-id "6792V39SK3" --password "${{ secrets.OSX_NOTARIZATION_APP_PWD }}"
xcrun notarytool submit build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}.pkg --keychain-profile "notarytool-profile" --wait
xcrun stapler staple build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}.pkg
- name: Upload to builds.jabref.org
if: (steps.checksecrets.outputs.secretspresent == 'YES')
shell: bash
run: |
echo "${{ secrets.buildJabRefPrivateKey }}" > sshkey
chmod 600 sshkey
rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ needs.build.outputs.branchname }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ jrrsync@build-upload.jabref.org:/var/www/builds.jabref.org/www/${{ needs.build.outputs.branchname }}/