Merge pull request ksahlin#268 from ksahlin/timer-nam-sorting

Fix timing of NAM sorting
Itolstoganov · Apr 26, 2023 · 63ec47b · 63ec47b
2 parents 27b7977 + 359efd8
commit 63ec47b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/aln.cpp b/src/aln.cpp
@@ -1384,7 +1384,7 @@ void align_PE_read(
     Timer nam_sort_timer;
     std::sort(nams1.begin(), nams1.end(), score);
     std::sort(nams2.begin(), nams2.end(), score);
-    statistics.tot_sort_nams += nam_timer.duration();
+    statistics.tot_sort_nams += nam_sort_timer.duration();
 
     Timer extend_timer;
     if (!map_param.is_sam_out) {