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Create a TileDB workspace
Karthik Gururaj edited this page Aug 25, 2016
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A TileDB workspace must be created before importing any data into a TileDB array - please refer to the terminology page to find out what a workspace means.
./bin/create_tiledb_workspace <workspace_dir>
The above command will create a workspace if the <workspace_directory> does not exist. If <workspace_directory>
exists, then the directory is not touched/modified.
We recommend running the above command on each node sequentially before importing any data. This ensures that the workspace directory gets created in a consistent manner before any data gets imported into TileDB arrays.
- Overview of GenomicsDB
- Compiling GenomicsDB
-
Importing variant data into GenomicsDB
- Create a TileDB workspace
- Importing data from VCFs/gVCFs into TileDB/GenomicsDB
- Importing data from CSVs into TileDB/GenomicsDB
- Incremental import into TileDB/GenomicsDB
- Overlapping variant calls in a sample
- Java interface for importing VCF/CSV files into TileDB/GenomicsDB
- Dealing with multiple GenomicsDB partitions
- Querying GenomicsDB
- HDFS or S3 or GCS support in GenomicsDB
- MPI with GenomicsDB
- GenomicsDB utilities
- Try out with Docker
- Common issues
- Bug report
- External Contributions