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Merged
s-t-h merged 4 commits into from
Jun 17, 2025
Merged

Merge dev into main #10

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7afc056
Update README.
s-t-h Jun 17, 2025
6db97eb
Update version information in build.gradle.
s-t-h Jun 17, 2025
4ac6d6d
Update README.
s-t-h Jun 17, 2025
a0c032a
Update README.
s-t-h Jun 17, 2025
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6 changes: 3 additions & 3 deletions README.md
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<p align="center">
<img width="256px" height="256px" src="https://github.com/Integrative-Transcriptomics/MUSIAL/blob/v2.4/media/logo_lucid_512.png">
<img width="256px" height="256px" src="https://github.com/Integrative-Transcriptomics/MUSIAL/blob/77ce6bca5c468d4a29f28a0b6c4c0f262026d1d4/media/logo_lucid_512.png">
</p>

# MUSIAL
Expand All @@ -14,7 +14,7 @@ MUSIAL enables a comprehensive assessment of variability within a species at the
- **Projection to genomic features (genes) facilitates allele- and proteoform-specific information** that supports the characterization of individual samples.
- **VCF based sequence reconstruction** at nucleotide and protein sequence level and tabular reports on sample, feature and variant statistics.

## 🔧 Usage
## 📖 Usage

An executable `jar` file (`Java 21`) is available from the [Releases](https://github.com/Integrative-Transcriptomics/MUSIAL/releases) section.
MUSIAL operates on a modular, task-based architecture that is primarily initiated by the `build` task, which creates a JSON file (_storage_) as its primary output; this is then used as input for all other tasks.
Expand Down Expand Up @@ -83,7 +83,7 @@ Further details on the use of the software and internal workflows can be found i

## 🌐 Web Interface

To provide user-friendly access to its functionalities, MUSIAL is available via a web interface at https://musial-tuevis.cs.uni-tuebingen.de/; currently running version `v2.3.8`.
To provide user-friendly access to its functionalities, MUSIAL is available via a web interface at https://musial-tuevis.cs.uni-tuebingen.de/ currently running version `v2.3.10`. The code is deposited in the `web` branch.

## 🔨 Build

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2 changes: 1 addition & 1 deletion build.gradle
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/*
Set meta-information for the project build.
*/
version 'v2.4.0'
version 'v2.4.1'
group 'de.tue.cs.ibmi.it'

println "Name: $name"
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