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Wip explicit instantiation #1

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c2f7040
WIP: Force explicit instantiation/optimization
hjmjohnson Sep 25, 2012
b5fdfdd
ENH: Moved definition to .hxx.
jessicaforbes Oct 29, 2012
112c7eb
ENH: Use more rigously defined types decarations
hjmjohnson Nov 1, 2012
1fefefe
ENH: Started adding itkFixedArray types.
hjmjohnson Oct 30, 2012
9c1ced0
ENH: Add explicit instantiation Size Offset
hjmjohnson Nov 8, 2012
2d183e8
ENH: small changes to fix linkage.
hjmjohnson Nov 8, 2012
e42839a
BUG: Inadvertantly removed code.
hjmjohnson Nov 9, 2012
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4 changes: 2 additions & 2 deletions Examples/DataRepresentation/Image/Image1.cxx
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Expand Up @@ -41,12 +41,12 @@ int main(int, char *[])
// Then we must decide with what type to represent the pixels
// and what the dimension of the image will be. With these two
// parameters we can instantiate the image class. Here we create
// a 3D image with \code{unsigned short} pixel data.
// a 3D image with \code{uint16_t} pixel data.
//
// Software Guide : EndLatex
//
// Software Guide : BeginCodeSnippet
typedef itk::Image< unsigned short, 3 > ImageType;
typedef itk::Image< uint16_t, 3 > ImageType;
// Software Guide : EndCodeSnippet


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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Image/Image2.cxx
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Expand Up @@ -39,7 +39,7 @@ int main( int , char * argv[])
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char PixelType;
typedef uint8_t PixelType;
const unsigned int Dimension = 3;

typedef itk::Image< PixelType, Dimension > ImageType;
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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Image/Image3.cxx
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Expand Up @@ -36,7 +36,7 @@
int main(int, char *[])
{
// First the image type should be declared
typedef itk::Image< unsigned short, 3 > ImageType;
typedef itk::Image< uint16_t, 3 > ImageType;

// Then the image object can be created
ImageType::Pointer image = ImageType::New();
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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Image/Image4.cxx
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Expand Up @@ -62,7 +62,7 @@

int main(int, char *[])
{
typedef itk::Image< unsigned short, 3 > ImageType;
typedef itk::Image< uint16_t, 3 > ImageType;

ImageType::Pointer image = ImageType::New();

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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Image/Image5.cxx
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Expand Up @@ -65,7 +65,7 @@ int main(int argc, char * argv[])
// Software Guide : EndLatex
//
// Software Guide : BeginCodeSnippet
typedef unsigned char PixelType;
typedef uint8_t PixelType;
const unsigned int Dimension = 3;
typedef itk::Image< PixelType, Dimension > ImageType;
// Software Guide : EndCodeSnippet
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8 changes: 4 additions & 4 deletions Examples/DataRepresentation/Image/ImageAdaptor1.cxx
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Expand Up @@ -20,7 +20,7 @@
//
//This example illustrates how the \doxygen{ImageAdaptor} can be used to cast
// an image from one pixel type to another. In particular, we will
// \emph{adapt} an \code{unsigned char} image to make it appear as an image of
// \emph{adapt} an \code{uint8_t} image to make it appear as an image of
// pixel type \code{float}.
//
// \index{itk::ImageAdaptor!Instantiation}
Expand Down Expand Up @@ -48,7 +48,7 @@
// provide methods \code{Set()} and \code{Get()}, and define the types of
// \code{InternalPixelType} and \code{ExternalPixelType}. The
// \code{InternalPixelType} corresponds to the pixel type of the image to be
// adapted (\code{unsigned char} in this example). The \code{ExternalPixelType}
// adapted (\code{uint8_t} in this example). The \code{ExternalPixelType}
// corresponds to the pixel type we wish to emulate with the ImageAdaptor
// (\code{float} in this case).
//
Expand All @@ -59,7 +59,7 @@
class CastPixelAccessor
{
public:
typedef unsigned char InternalType;
typedef uint8_t InternalType;
typedef float ExternalType;

static void Set(InternalType & output, const ExternalType & input)
Expand Down Expand Up @@ -102,7 +102,7 @@ int main( int argc, char *argv[] )


// Software Guide : BeginCodeSnippet
typedef unsigned char InputPixelType;
typedef uint8_t InputPixelType;
const unsigned int Dimension = 2;
typedef itk::Image< InputPixelType, Dimension > ImageType;

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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Image/ImageAdaptor2.cxx
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Expand Up @@ -144,7 +144,7 @@ int main( int argc, char *argv[] )


// Software Guide : BeginCodeSnippet
typedef itk::Image< unsigned char, Dimension > OutputImageType;
typedef itk::Image< uint8_t, Dimension > OutputImageType;
typedef itk::RescaleIntensityImageFilter< ImageAdaptorType,
OutputImageType
> RescalerType;
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4 changes: 2 additions & 2 deletions Examples/DataRepresentation/Image/ImageAdaptor3.cxx
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Expand Up @@ -128,7 +128,7 @@ int main( int argc, char *argv[] )


// Software Guide : BeginCodeSnippet
typedef unsigned char InputPixelType;
typedef uint8_t InputPixelType;
const unsigned int Dimension = 2;
typedef itk::Image< InputPixelType, Dimension > InputImageType;
typedef itk::CovariantVector< float, Dimension > VectorPixelType;
Expand Down Expand Up @@ -205,7 +205,7 @@ int main( int argc, char *argv[] )
// Software Guide : EndCodeSnippet


typedef itk::Image< unsigned char, Dimension > OutputImageType;
typedef itk::Image< uint8_t, Dimension > OutputImageType;
typedef itk::RescaleIntensityImageFilter< ImageAdaptorType, OutputImageType>
RescalerType;
RescalerType::Pointer rescaler = RescalerType::New();
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4 changes: 2 additions & 2 deletions Examples/DataRepresentation/Image/ImageAdaptor4.cxx
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Expand Up @@ -61,8 +61,8 @@
class ThresholdingPixelAccessor
{
public:
typedef unsigned char InternalType;
typedef unsigned char ExternalType;
typedef uint8_t InternalType;
typedef uint8_t ExternalType;

ThresholdingPixelAccessor() : m_Threshold(0) {};

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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Image/RGBImage.cxx
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Expand Up @@ -56,7 +56,7 @@ int main( int , char * argv[] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef itk::RGBPixel< unsigned char > PixelType;
typedef itk::RGBPixel< uint8_t > PixelType;
// Software Guide : EndCodeSnippet


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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Mesh/ImageToPointSet.cxx
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Expand Up @@ -43,7 +43,7 @@ int main( int argc, char * argv[] )
}


typedef unsigned char PixelType;
typedef uint8_t PixelType;
const unsigned int Dimension = 2;

typedef itk::Image< PixelType, Dimension > ImageType;
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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Mesh/PointSet1.cxx
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Expand Up @@ -62,7 +62,7 @@ int main(int, char *[])
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef itk::PointSet< unsigned short, 3 > PointSetType;
typedef itk::PointSet< uint16_t, 3 > PointSetType;
// Software Guide : EndCodeSnippet


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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Mesh/PointSet2.cxx
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Expand Up @@ -31,7 +31,7 @@

int main(int, char *[])
{
typedef itk::PointSet< unsigned short, 3 > PointSetType;
typedef itk::PointSet< uint16_t, 3 > PointSetType;

// Software Guide : BeginLatex
//
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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Mesh/PointSet3.cxx
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Expand Up @@ -44,7 +44,7 @@ int main(int, char *[])
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned short PixelType;
typedef uint16_t PixelType;
typedef itk::PointSet< PixelType, 3 > PointSetType;
// Software Guide : EndCodeSnippet

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2 changes: 1 addition & 1 deletion Examples/DataRepresentation/Path/PolyLineParametricPath1.cxx
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Expand Up @@ -55,7 +55,7 @@ int main(int argc, char * argv [] )
// Software Guide : BeginCodeSnippet
const unsigned int Dimension = 2;

typedef itk::Image< unsigned char, Dimension > ImageType;
typedef itk::Image< uint8_t, Dimension > ImageType;

typedef itk::PolyLineParametricPath< Dimension > PathType;
// Software Guide : EndCodeSnippet
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2 changes: 1 addition & 1 deletion Examples/Filtering/AntiAliasBinaryImageFilter.cxx
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Expand Up @@ -77,7 +77,7 @@ int main(int argc, char* argv[])
}


typedef unsigned char CharPixelType; // IO
typedef uint8_t CharPixelType; // IO
typedef double RealPixelType; // Operations
const unsigned int Dimension = 3;

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6 changes: 3 additions & 3 deletions Examples/Filtering/BilateralImageFilter.cxx
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Expand Up @@ -116,8 +116,8 @@ int main( int argc, char * argv[] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char InputPixelType;
typedef unsigned char OutputPixelType;
typedef uint8_t InputPixelType;
typedef uint8_t OutputPixelType;

typedef itk::Image< InputPixelType, 2 > InputImageType;
typedef itk::Image< OutputPixelType, 2 > OutputImageType;
Expand Down Expand Up @@ -216,7 +216,7 @@ int main( int argc, char * argv[] )
//
// Software Guide : EndLatex

typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;
typedef itk::Image< WritePixelType, 2 > WriteImageType;
typedef itk::RescaleIntensityImageFilter<
OutputImageType, WriteImageType > RescaleFilterType;
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4 changes: 2 additions & 2 deletions Examples/Filtering/BinaryMedianImageFilter.cxx
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Expand Up @@ -80,8 +80,8 @@ int main( int argc, char * argv[] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char InputPixelType;
typedef unsigned char OutputPixelType;
typedef uint8_t InputPixelType;
typedef uint8_t OutputPixelType;

typedef itk::Image< InputPixelType, 2 > InputImageType;
typedef itk::Image< OutputPixelType, 2 > OutputImageType;
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2 changes: 1 addition & 1 deletion Examples/Filtering/BinaryMinMaxCurvatureFlowImageFilter.cxx
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Expand Up @@ -194,7 +194,7 @@ int main( int argc, char * argv[] )
//
// Software Guide : EndLatex

typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;

typedef itk::Image< WritePixelType, 2 > WriteImageType;

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4 changes: 2 additions & 2 deletions Examples/Filtering/BinaryThresholdImageFilter.cxx
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Expand Up @@ -79,8 +79,8 @@ int main( int argc, char * argv[] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char InputPixelType;
typedef unsigned char OutputPixelType;
typedef uint8_t InputPixelType;
typedef uint8_t OutputPixelType;
// Software Guide : EndCodeSnippet


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2 changes: 1 addition & 1 deletion Examples/Filtering/BinomialBlurImageFilter.cxx
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Expand Up @@ -127,7 +127,7 @@ int main( int argc, char * argv[] )

// This section connects the filter output to a writer
//
typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;
typedef itk::Image< WritePixelType, 2 > WriteImageType;
typedef itk::RescaleIntensityImageFilter<
OutputImageType, WriteImageType > RescaleFilterType;
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2 changes: 1 addition & 1 deletion Examples/Filtering/CannyEdgeDetectionImageFilter.cxx
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Expand Up @@ -82,7 +82,7 @@ int main(int argc, char* argv[])
std::cout << "UpperThreshold = " << upperThreshold << std::endl;
std::cout << "LowerThreshold = " << lowerThreshold << std::endl;

typedef unsigned char CharPixelType; // IO
typedef uint8_t CharPixelType; // IO
typedef double RealPixelType; // Operations
const unsigned int Dimension = 2;

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2 changes: 1 addition & 1 deletion Examples/Filtering/CastingImageFilters.cxx
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Expand Up @@ -112,7 +112,7 @@ int main( int argc, char * argv[] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char InputPixelType;
typedef uint8_t InputPixelType;
typedef float OutputPixelType;
// Software Guide : EndCodeSnippet

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2 changes: 1 addition & 1 deletion Examples/Filtering/CurvatureAnisotropicDiffusionImageFilter.cxx
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Expand Up @@ -195,7 +195,7 @@ int main( int argc, char * argv[] )
// after the curvature flow filter.
//

typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;
typedef itk::Image< WritePixelType, 2 > WriteImageType;
typedef itk::RescaleIntensityImageFilter<
OutputImageType, WriteImageType > RescaleFilterType;
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2 changes: 1 addition & 1 deletion Examples/Filtering/CurvatureFlowImageFilter.cxx
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Expand Up @@ -201,7 +201,7 @@ int main( int argc, char * argv[] )
//
// Software Guide : EndLatex

typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;

typedef itk::Image< WritePixelType, 2 > WriteImageType;

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4 changes: 2 additions & 2 deletions Examples/Filtering/DanielssonDistanceMapImageFilter.cxx
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Expand Up @@ -76,8 +76,8 @@ int main( int argc, char * argv[] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char InputPixelType;
typedef unsigned short OutputPixelType;
typedef uint8_t InputPixelType;
typedef uint16_t OutputPixelType;
typedef itk::Image< InputPixelType, 2 > InputImageType;
typedef itk::Image< OutputPixelType, 2 > OutputImageType;
// Software Guide : EndCodeSnippet
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2 changes: 1 addition & 1 deletion Examples/Filtering/DerivativeImageFilter.cxx
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Expand Up @@ -168,7 +168,7 @@ int main( int argc, char * argv[] )
// Software Guide : EndLatex


typedef itk::Image< unsigned char, Dimension > WriteImageType;
typedef itk::Image< uint8_t, Dimension > WriteImageType;

typedef itk::RescaleIntensityImageFilter<
OutputImageType,
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4 changes: 2 additions & 2 deletions Examples/Filtering/DiffusionTensor3DReconstructionImageFilter.cxx
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Expand Up @@ -78,8 +78,8 @@ int main( int argc, char *argv[] )
bool readb0 = false;
double b0 = 0;

typedef unsigned short PixelType;
typedef itk::VectorImage<unsigned short, 3> ImageType;
typedef uint16_t PixelType;
typedef itk::VectorImage<uint16_t, 3> ImageType;

itk::ImageFileReader<ImageType>::Pointer reader
= itk::ImageFileReader<ImageType>::New();
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2 changes: 1 addition & 1 deletion Examples/Filtering/DigitallyReconstructedRadiograph1.cxx
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Expand Up @@ -264,7 +264,7 @@ int main( int argc, char *argv[] )
// Software Guide : BeginCodeSnippet
const unsigned int Dimension = 3;
typedef short InputPixelType;
typedef unsigned char OutputPixelType;
typedef uint8_t OutputPixelType;

typedef itk::Image< InputPixelType, Dimension > InputImageType;
typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
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2 changes: 1 addition & 1 deletion Examples/Filtering/DiscreteGaussianImageFilter.cxx
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Expand Up @@ -184,7 +184,7 @@ int main( int argc, char * argv[] )
//
// Software Guide : EndLatex

typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;
typedef itk::Image< WritePixelType, 2 > WriteImageType;
typedef itk::RescaleIntensityImageFilter<
OutputImageType, WriteImageType > RescaleFilterType;
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2 changes: 1 addition & 1 deletion Examples/Filtering/FFTDirectInverse.cxx
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Expand Up @@ -54,7 +54,7 @@ int main( int argc, char * argv[] )

// Software Guide : BeginCodeSnippet
const unsigned int Dimension = 2;
typedef unsigned short IOPixelType;
typedef uint16_t IOPixelType;
typedef float WorkPixelType;

typedef itk::Image< IOPixelType, Dimension > IOImageType;
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4 changes: 2 additions & 2 deletions Examples/Filtering/FFTDirectInverse2.cxx
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Expand Up @@ -63,8 +63,8 @@ int main( int argc, char * argv[] )

// Software Guide : BeginCodeSnippet
const unsigned int Dimension = 2;
// typedef unsigned char OutputPixelType;
typedef unsigned short OutputPixelType;
// typedef uint8_t OutputPixelType;
typedef uint16_t OutputPixelType;
typedef float WorkPixelType;

typedef itk::Image< WorkPixelType, Dimension > InputImageType;
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2 changes: 1 addition & 1 deletion Examples/Filtering/FFTImageFilter.cxx
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Expand Up @@ -205,7 +205,7 @@ int main( int argc, char * argv [] )
// Software Guide : EndCodeSnippet


typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;
typedef itk::Image< WritePixelType, Dimension > WriteImageType;


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2 changes: 1 addition & 1 deletion Examples/Filtering/FFTImageFilterFourierDomainFiltering.cxx
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Expand Up @@ -90,7 +90,7 @@ int main( int argc, char * argv [] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char MaskPixelType;
typedef uint8_t MaskPixelType;

typedef itk::Image< MaskPixelType, Dimension > MaskImageType;
// Software Guide : EndCodeSnippet
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2 changes: 1 addition & 1 deletion Examples/Filtering/FlipImageFilter.cxx
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Expand Up @@ -78,7 +78,7 @@ int main( int argc, char * argv[] )
// Software Guide : EndLatex

// Software Guide : BeginCodeSnippet
typedef unsigned char PixelType;
typedef uint8_t PixelType;

typedef itk::Image< PixelType, 2 > ImageType;
// Software Guide : EndCodeSnippet
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2 changes: 1 addition & 1 deletion Examples/Filtering/GradientAnisotropicDiffusionImageFilter.cxx
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Expand Up @@ -174,7 +174,7 @@ int main( int argc, char * argv[] )
//
// The output of the filter is rescaled here and then sent to a writer.
//
typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;
typedef itk::Image< WritePixelType, 2 > WriteImageType;
typedef itk::RescaleIntensityImageFilter<
OutputImageType, WriteImageType > RescaleFilterType;
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2 changes: 1 addition & 1 deletion Examples/Filtering/GradientMagnitudeImageFilter.cxx
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Expand Up @@ -175,7 +175,7 @@ int main( int argc, char * argv[] )
//
// Software Guide : EndLatex

typedef unsigned char WritePixelType;
typedef uint8_t WritePixelType;
typedef itk::Image< WritePixelType, 2 > WriteImageType;
typedef itk::RescaleIntensityImageFilter<
OutputImageType, WriteImageType > RescaleFilterType;
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