refactor(apply-presentation-state-to-image): presentation-state-file is

arg

Bumping itk-wasm, helps with a 'required option'.

BREAKING_CHANGE: apply-presentation-state-to-image presentation-state-file is an argument, as opposed to an optional parameter, since it is required.

BREAKING_CHANGES.md

@@ -10,6 +10,11 @@ For a log and guide when transitioning from itk.js to itk-wasm,
 please see [the migration
 guide](doc/content/docs/itk_js_to_itk_wasm_migration_guide.md).
 
+## From 1.0.0-b.101 to 1.0.0-b.102
+
+- apply-presentation-state-to-image presentation-state-file is an argument, as
+  opposed to an optional parameter, since it is required.
+
 ## From 1.0.0-b.72 to 1.0.0-b.73
 
 - Emscripten modules no longer support filesystem-based IO for binary size / performance.

package.json

@@ -38,9 +38,11 @@
     "build:bindgen:python:compress-stringify": "./src/itk-wasm-cli.js -s packages/compress-stringify -b wasi-build bindgen --language python --package-name itkwasm-compress-stringify --package-description \"Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.\" --package-version 0.4.4 --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
     "build:emscripten:dicom": "node ./src/itk-wasm-cli.js -s packages/dicom -b emscripten-build build ",
     "build:bindgen:typescript:dicom": "./src/itk-wasm-cli.js -s packages/dicom -b emscripten-build bindgen --package-version 0.3.0 --package-name @itk-wasm/dicom --package-description \"Read files and images related to DICOM file format.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
+    "build:bindgen:python:dicom": "./src/itk-wasm-cli.js -s packages/dicom -b wasi-build bindgen --package-version 0.3.0 --package-name itkwasmr-dicom --package-description \"Read files and images related to DICOM file format.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
     "build:emscripten:packages": "npm run build:emscripten:compress-stringify && npm run build:bindgen:typescript:compress-stringify && npm run build:emscripten:dicom && npm run build:bindgen:typescript:dicom",
     "build:wasi": "node ./src/build-wasi.js && npm run build:wasi:packages",
     "build:wasi:compress-stringify": "node ./src/itk-wasm-cli.js -i itkwasm/wasi:latest -s packages/compress-stringify -b wasi-build build",
+    "build:wasi:dicom": "node ./src/itk-wasm-cli.js -i itkwasm/wasi:latest -s packages/dicom -b wasi-build build",
     "build:wasi:packages": "npm run build:wasi:compress-stringify && npm run build:bindgen:python:compress-stringify",
     "cypress:open": "npx cypress open",
     "cypress:run": "npx cypress run --config defaultCommandTimeout=8000",

packages/dicom/apply-presentation-state-to-image.cxx

@@ -472,14 +472,19 @@ static void dumpPresentationState(STD_NAMESPACE ostream &out, DVPresentationStat
 int main(int argc, char *argv[])
 {
   itk::wasm::Pipeline pipeline("apply-presentation-state-to-image", "Apply a presentation state to a given DICOM image and render output as pgm bitmap or dicom file.", argc, argv);
+
   // Inputs
   std::string imageIn;
   pipeline.add_option("image-in", imageIn, "Input DICOM file")->required()->check(CLI::ExistingFile)->type_name("INPUT_BINARY_FILE");
 
+  std::string pstateFile;
+  pipeline.add_option("presentation-state-file", pstateFile, "Process using presentation state file")->required()->check(CLI::ExistingFile)->type_name("INPUT_BINARY_FILE");
+
   // Outputs
   // Metadata output regarding overlays
   itk::wasm::OutputTextStream pstateOutStream;
   pipeline.add_option("presentation-state-out-stream", pstateOutStream, "Output overlay information")->type_name("OUTPUT_JSON");
+
   // Processed output image
   constexpr unsigned int Dimension = 2;
   using PixelType = unsigned char;
@@ -489,9 +494,6 @@ int main(int argc, char *argv[])
   pipeline.add_option("output-image", outputImage, "Output image")->type_name("OUTPUT_IMAGE");
 
   // Parameters
-  // addGroup "processing options:"
-  std::string pstateFile;
-  pipeline.add_option("--presentation-state-file", pstateFile, "filename: string. Process using presentation state file")->required()->check(CLI::ExistingFile)->type_name("INPUT_BINARY_FILE");
   std::string configFile;
   pipeline.add_option("--config-file", configFile, "filename: string. Process using settings from configuration file");
   // process a specific frame within the input dicom:

packages/dicom/typescript/package.json

@@ -32,13 +32,12 @@
   "keywords": [
     "itk",
     "wasm",
-    "webassembly",
-    "wasi"
+    "webassembly"
   ],
   "author": "",
   "license": "Apache-2.0",
   "dependencies": {
-    "itk-wasm": "^1.0.0-b.79"
+    "itk-wasm": "^1.0.0-b.101"
   },
   "devDependencies": {
     "@rollup/plugin-commonjs": "^24.0.0",