Draft high level function to setup and run simulation

[jacobcook1995]

Description

I've written a draft of the high level function to setup and run the virtual_rainforest model. Most of this function is just a set of TODOs at the moment, but config validation and model configuration is currently performed. This involved defining functions to extract the models to be configured from the config object, and to actually configure a set of models which can then be used downstream.

While doing this I also changed error handling a bit to ensure that the user is provided with the maximum amount of useful information, e.g. report all models that fail to configure before ending the process, and reporting all schema validation errors rather than just the first.

Fixes #98
Fixes #100

Type of change

• New feature (non-breaking change which adds functionality)
• Optimization (back-end change that speeds up the code)
• Bug fix (non-breaking change which fixes an issue)

Key checklist

• Make sure you've run the pre-commit checks: $ pre-commit run -a
• All tests pass: $ poetry run pytest

Further checks

• Code is commented, particularly in hard-to-understand areas
• Tests added that prove fix is effective or that feature works

[davidorme]

The main structure looks good - some thoughts about where errors get raised and a minor point about string formatting in logging

[codecov-commenter]

Codecov Report

Merging #112 (d3ab96e) into develop (5567582) will increase coverage by 0.48%.
The diff coverage is 94.02%.

@@             Coverage Diff             @@
##           develop     #112      +/-   ##
===========================================
+ Coverage    95.90%   96.38%   +0.48%     
===========================================
  Files            9       10       +1     
  Lines          366      415      +49     
===========================================
+ Hits           351      400      +49     
  Misses          15       15              

Impacted Files	Coverage Δ
virtual_rainforest/main.py	90.32% <90.32%> (ø)
virtual_rainforest/soil/model.py	94.87% <93.75%> (+6.30%)	⬆️
virtual_rainforest/__init__.py	100.00% <100.00%> (ø)
virtual_rainforest/core/config.py	98.17% <100.00%> (+0.80%)	⬆️
virtual_rainforest/core/model.py	100.00% <100.00%> (ø)

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[dalonsoa]

As usual, I've reviewed the new code and will work on the tests once this is sorted out.

Good first attempt as having something that runs!!

[dalonsoa]

Very nice! Nothing more to add!

[davidorme]

LGTM.