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4 changes: 2 additions & 2 deletions notebooks/IDC_segmentation_primer.ipynb
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"2. Explore relevant functionality of IDC to support data exploration using Google BigQuery, cohort definition, and retrieval of the data.\n",
"3. Learn how to analyze and visualize the data retrieved from IDC on an example of segmentation of abdominal organs at risk.\n",
"\n",
"This notebook will guide you thought the complete process of identifying a relevant DICOM dataset from IDC, retrieving it to the Colab VM, preparing it for nnU-Net processing, installing nnU-Net and applying it to the dataset, and visualizing the segmentation results produced by nnU-Net.\n",
"This notebook will guide you through the complete process of identifying a relevant DICOM dataset from IDC, retrieving it to the Colab VM, preparing it for nnU-Net processing, installing nnU-Net and applying it to the dataset, and visualizing the segmentation results produced by nnU-Net.\n",
"\n",
"Note that it is not the purpose of this tutorial to promote a specific tool, or assess its robustness. We aim to provide an example of how a tool can be used for analyzing a sample dataset from IDC. We hope that after completing this tutorial you will be empowered and motivated to experiment with more tools and apply them to more datasets in IDC!\n",
"\n",
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},
"nbformat": 4,
"nbformat_minor": 0
}
}