Added gitpages update script

index.html

@@ -11,7 +11,7 @@
 
 <meta name="author" content="Niki Nenadic and Ido Bar" />
 
-<meta name="date" content="2025-01-29" />
+<meta name="date" content="2025-01-30" />
 
 <title>Transcriptome analysis of Marteilia sydneyi and Saccostrea glomerata during QX infection in Sydney Rock Oysters</title>
 
@@ -3359,7 +3359,7 @@
 
 <h1 class="title toc-ignore">Transcriptome analysis of <em>Marteilia sydneyi</em> and <em>Saccostrea glomerata</em> during QX infection in Sydney Rock Oysters</h1>
 <h4 class="author">Niki Nenadic and Ido Bar</h4>
-<h4 class="date">29 January 2025</h4>
+<h4 class="date">30 January 2025</h4>
 
 </div>
 
@@ -4075,7 +4075,7 @@ <h4>Gene Expression Analysis</h4>
 </div>
 <div id="general-information" class="section level2">
 <h2>General information</h2>
-<p>This document was last updated at 2025-01-29 23:29:50 using R Markdown (built with R version 4.2.1 (2022-06-23 ucrt)). The source code for this webpage can be found at <a href="https://github.com/IdoBar/QX_bioinfo_analysis" class="uri">https://github.com/IdoBar/QX_bioinfo_analysis</a> (or via the GitHub logo at the top right corner of this page).</p>
+<p>This document was last updated at 2025-01-30 00:05:10 using R Markdown (built with R version 4.2.1 (2022-06-23 ucrt)). The source code for this webpage can be found at <a href="https://github.com/IdoBar/QX_bioinfo_analysis" class="uri">https://github.com/IdoBar/QX_bioinfo_analysis</a> (or via the GitHub logo at the top right corner of this page).</p>
 <p>Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. It is especially powerful at authoring documents and reports which include code and can execute code and use the results in the output. For more details on using R Markdown see <a href="http://rmarkdown.rstudio.com" class="uri">http://rmarkdown.rstudio.com</a>, <a href="https://bookdown.org/yihui/rmarkdown/">R Markdown: The Definitive Guide</a> and <a href="https://rstudio.github.io/cheatsheets/html/rmarkdown.html">Rmarkdown cheatsheet</a>.</p>
 <hr />
 </div>
@@ -4149,6 +4149,24 @@ <h2>Bibliography</h2>
 </div>
 </div>
 
+<script type="text/javascript">
+(function() {
+  var links = document.getElementsByTagName('a'), link, n, child;
+  for (var i = 0; i < links.length; i++) {
+    link = links[i];
+    if (/^(https?:)?\/\//.test(link.getAttribute('href'))) {
+      link.target = '__blank';
+      n = link.childElementCount;
+      if (n === 0 && link.innerText) {
+        link.innerHTML += ' &boxbox;';  // pure text
+      } else if (n === 2) {
+        // the page /formats.html
+        child = link.firstElementChild;
+        if (child.className === 'formatName') child.innerHTML += ' &boxbox;';
+      }
+    }
+  }
+})();</script>
 
 
 </div>

update_gitpage.sh

@@ -0,0 +1,5 @@
+#!/bin/bash 
+cp QX_bioinfo_analysis.html index.html
+git add .
+git commit -m "$1"
+git push