Update dependant versions

.github/workflows/ci.yml

@@ -7,7 +7,7 @@ on:
 
 jobs:
   python-version:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
     strategy:
       matrix:
         python-version: ['3.9',
@@ -27,14 +27,14 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install setuptools==68.2.2 tox==3.24.5 tox-gh-actions==2.9.1
+          python -m pip install setuptools==68.2.2 tox==4.12.0 tox-gh-actions==3.2.0
 
       - name: Optional - Install frouros (only used by linters)
         if: matrix.python-version == 3.9
         run: |
           python -m venv .venv
           source .venv/bin/activate
-          pip install "pytest>=7.1.2,<7.2"
+          pip install "pytest>=7.4.4,<7.5"
           pip install -e .
 
       - name: Run tox

.github/workflows/code_coverage.yml

@@ -8,7 +8,7 @@ on:
 jobs:
   code-coverage:
     if: github.event.pull_request.merged == true
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4

.github/workflows/publish.yml

@@ -9,7 +9,7 @@ permissions:
 
 jobs:
   publish:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
 
     steps:
       - name: Checkout

.readthedocs.yaml

@@ -7,7 +7,7 @@ version: 2
 
 # Set the version of Python and other tools you might need
 build:
-  os: ubuntu-20.04
+  os: ubuntu-22.04
   tools:
     python: "3.9"
 

frouros/callbacks/base.py

@@ -57,14 +57,14 @@ def set_detector(self, detector) -> None:
     #         )
     #     self._detector = value
 
-    def on_fit_start(self, X: np.ndarray) -> None:  # noqa: N803
+    def on_fit_start(self, X: np.ndarray) -> None:  # noqa: N803, B027
         """On fit start method.
 
         :param X: reference data
         :type X: numpy.ndarray
         """
 
-    def on_fit_end(self, X: np.ndarray) -> None:  # noqa: N803
+    def on_fit_end(self, X: np.ndarray) -> None:  # noqa: N803, B027
         """On fit end method.
 
         :param X: reference data

frouros/datasets/base.py

@@ -99,10 +99,17 @@ def _remove_temporal_file(self) -> None:
 
     def _request_file(self, url: str) -> requests.models.Response:
         logger.info("Trying to download data from %s to %s", url, self._file_path)
-        request_head = requests.head(url=url)
+        request_head = requests.head(
+            url=url,
+            timeout=10,
+        )
         if not request_head.ok:
             raise requests.exceptions.RequestException()
-        request_response = requests.get(url=url, stream=True)
+        request_response = requests.get(
+            url=url,
+            stream=True,
+            timeout=10,
+        )
         request_response.raise_for_status()
         return request_response
 
@@ -175,7 +182,7 @@ def __repr__(self) -> str:
         )
 
 
-class BaseDatasetGenerator(abc.ABC):
+class BaseDatasetGenerator(abc.ABC):  # noqa: B024
     """Abstract class representing a dataset generator."""
 
     def __init__(self, seed: Optional[int] = None) -> None:

frouros/detectors/concept_drift/base.py

@@ -9,7 +9,7 @@
 from frouros.utils.checks import check_callbacks
 
 
-class BaseConceptDriftConfig(abc.ABC):
+class BaseConceptDriftConfig(abc.ABC):  # noqa: B024
     """Abstract class representing a concept drift configuration class."""
 
     def __init__(

frouros/detectors/concept_drift/streaming/statistical_process_control/eddm.py

@@ -367,7 +367,6 @@ def _update(self, value: Union[int, float], **kwargs) -> None:
                 self.num_instances
                 >= self.config.min_num_misclassified_instances  # type: ignore
             ):
-
                 distance_threshold = (
                     self.mean_distance_error
                     + self.config.level * self.std_distance_error  # type: ignore

frouros/detectors/data_drift/batch/statistical_test/chisquare.py

@@ -1,7 +1,8 @@
 """ChiSquareTest (Chi-square test) module."""
 
 import collections
-from typing import Optional, Tuple, Union
+import typing
+from typing import Optional, Set, Tuple, Union
 
 import numpy as np  # type: ignore
 from scipy.stats import chi2_contingency  # type: ignore
@@ -77,19 +78,20 @@ def _statistical_test(
         return test
 
     @staticmethod
+    @typing.no_type_check  # FIXME: X_ref_counter and X_counter cause mypy errors  # pylint: disable=fixme  # noqa: E501
     def _calculate_frequencies(
         X_ref: np.ndarray,  # noqa: N803
         X: np.ndarray,
     ) -> Tuple[list[int], list[int]]:
         X_ref_counter, X_counter = [  # noqa: N806
             *map(collections.Counter, [X_ref, X])  # noqa: N806
         ]
-        possible_values = set([*X_ref_counter.keys()] + [*X_counter.keys()])
+        possible_values: Set[str] = set(
+            [*X_ref_counter.keys()] + [*X_counter.keys()]
+        )  # noqa: N806
         f_exp, f_obs = {}, {}
         for value in possible_values:
-            f_exp[value] = X_ref_counter.get(value, 0)
-            f_obs[value] = X_counter.get(value, 0)
-        f_exp_values, f_obs_values = [
-            *map(list, [f_exp.values(), f_obs.values()])  # type: ignore
-        ]
-        return f_exp_values, f_obs_values  # type: ignore
+            f_exp[value] = X_ref_counter.get(value, 0)  # noqa: N806
+            f_obs[value] = X_counter.get(value, 0)  # noqa: N806
+        f_exp_values, f_obs_values = [*map(list, [f_exp.values(), f_obs.values()])]
+        return f_exp_values, f_obs_values

frouros/tests/conftest.py

@@ -389,9 +389,9 @@ def train_prediction_normal(
 
 
 @pytest.fixture(scope="module", name="dataset_simple")
-def concept_drift_dataset_simple() -> Tuple[
-    Tuple[np.ndarray, np.ndarray], Tuple[np.ndarray, np.ndarray]
-]:
+def concept_drift_dataset_simple() -> (
+    Tuple[Tuple[np.ndarray, np.ndarray], Tuple[np.ndarray, np.ndarray]]
+):
     """Dataset with multiple concepts to induce concept drift.
 
     :return: dataset split in reference and test

pyproject.toml

@@ -36,26 +36,26 @@ classifiers = [
 ]
 requires-python = ">=3.9,<3.13"
 dependencies = [
-    "matplotlib>=3.6.0,<3.9",
-    "numpy>=1.24.0,<1.27",
+    "matplotlib>=3.8.2,<3.9",
+    "numpy>=1.26.3,<1.27",
     "requests>=2.31.0,<2.32",
-    "scipy>=1.10.0,<1.12",
-    "tqdm>=4.65,<5",
+    "scipy>=1.11.4,<1.12",
+    "tqdm>=4.66.1,<5.0",
 ]
 
 [project.optional-dependencies]
 docs = [
-    "sphinx>=5.3.0,<7.3",
-    "sphinx-book-theme>=1.0.0,<1.2",
-    "sphinxcontrib-bibtex>=2.5.0,<2.7",
-    "myst-parser>=0.18.0,<2.1",
-    "myst-nb>=0.17.0,<1.1",
+    "sphinx>=7.2.6,<7.3",
+    "sphinx-book-theme>=1.1.0,<1.2",
+    "sphinxcontrib-bibtex>=2.6.2,<2.7",
+    "myst-parser>=2.0.0,<2.1",
+    "myst-nb>=1.0.0,<1.1",
 ]
 notebooks = [
-    "scikit-learn>=1.2.0,<1.4",
-    "torch>=1.13.0,<2.2",
-    "torchvision>=0.14.0,<0.17",
-    "ipywidgets>=8.0.0,<8.2",
+    "scikit-learn>=1.3.2,<1.4",
+    "torch>=2.1.2,<2.2",
+    "torchvision>=0.16.2,<0.17",
+    "ipywidgets>=8.1.1,<8.2",
 ]
 
 [project.urls]
@@ -67,8 +67,8 @@ download = "https://pypi.org/project/frouros/"
 [build-system]
 requires = [
     "setuptools>=61.0,<69.0",
-    "wheel>=0.37.1,<0.43",
+    "wheel>=0.42.0,<0.43",
     "toml>=0.10.2,<0.11",
-    "build>=0.7.0,<1.1",
+    "build>=1.0.3,<1.1",
 ]
 build-backend = "setuptools.build_meta"

tox.ini

@@ -1,5 +1,5 @@
 [tox]
-minversion = 3.24.5
+minversion = 4.12.0
 envlist =
     py3{9, 10, 11, 12}
     linters
@@ -21,10 +21,10 @@ python =
 # Force to upgrade pip/wheel/setuptools to the latest version
 download = True
 deps =
-    pytest>=7.2.1,<7.3
-    pytest-cov>=4.0.0,<4.1
-    pytest-mock>=3.10.0<3.11
-    scikit-learn>=1.2.0<1.3
+    pytest>=7.4.4,<7.5
+    pytest-cov>=4.1.0,<4.2
+    pytest-mock>=3.12.0,<3.13
+    scikit-learn>=1.3.2,<1.4
 commands = pytest --cov={[base]package} \
            --cov-report term \
            --cov-report=xml
@@ -33,7 +33,7 @@ commands = pytest --cov={[base]package} \
 basepython = {[base]python}
 skip_install = {[base]skip_install}
 deps =
-    black>=22.3,<22.4
+    black>=23.12.1,<24.0
 commands = black --check --diff {[base]package}
 
 [flake8]
@@ -53,19 +53,17 @@ exclude =
     .venv,
     .env
 max-complexity = 10
-format = ${cyan}%(path)s${reset}:${yellow_bold}%(row)d${reset}:${green_bold}%(col)d${reset}: ${red_bold}%(code)s${reset} %(text)s
 
 [testenv:flake8]
 basepython = {[base]python}
 skip_install = {[base]skip_install}
 deps =
-    flake8>=4.0,<4.1
-    flake8-bugbear>=22.3,<22.4
-    flake8-docstrings>=1.6,<1.7
-    flake8-typing-imports>=1.12,<1.13
-    flake8-colors>=0.1,<0.2
-    pep8-naming>=0.12,<0.13
-    pydocstyle>=6.1,<6.2
+    flake8>=7.0.0,<8.0
+    flake8-bugbear>=23.12.2,<24.0
+    flake8-docstrings>=1.7.0,<1.8
+    flake8-typing-imports>=1.15.0,<1.16
+    pep8-naming>=0.13.3,<0.14
+    pydocstyle>=6.3.0,<6.4
 commands = flake8
 
 [testenv:mypy]
@@ -74,7 +72,7 @@ skip_install = {[base]skip_install}
 deps =
     # FIXME: 0.971 version generates new unhandled warnings
     mypy>=0.941,<0.971
-    types-requests
+    types-requests>=2.31.0,<2.32
 plugins = numpy.typing.mypy_plugin
 commands = mypy {[base]package}
 
@@ -86,7 +84,7 @@ norecursedirs = docs
 basepython = {[base]python}
 skip_install = {[base]skip_install}
 deps =
-    pylint>=2.12,<2.13
+    pylint>=3.0.3,<3.1.0
 commands =
     pylint {[base]package} --good-names=b,d,df,e,f,h,i,j,m,n,p,w,x,y,z,r,X,en,js,kl,XY_chunks_combinations,X_chunks,X_chunks_combinations,X_concat,X_counter,X_extra,X_fold_test,X_fold_train,X_hist,X_merge,X_new_context,X_new_ref,X_num_samples,X_queue,X_sorted,X_percents,X_permuted,X_permuted_num_samples,X_permuted_,X_permuted_concat,X_permuted_ref_,X_permuted_ref_num_samples,X_preprocessed,X_ref,X_ref_hist,X_ref_counter,X_ref_percents,X_ref_rvs,X_ref_rv_histogram,X_rvs,X_rv_histogram,X_ref,_X_ref,X_ref_num_samples,X_ref_univariate,X_ref_multivariate,X_sample,X_samples,X_test,X_test_univariate,X_test_multivariate,X_train,y,Y,Y_chunks,Y_chunks_copy,Y_chunks_combinations,Y_hist,Y_percents,Y_num_samples,_X_num_samples --disable=too-many-instance-attributes,consider-using-with,too-few-public-methods --ignore-comments=yes --ignore-docstrings=yes --ignore-imports=yes --max-args=7 --min-similarity-lines=13 --extension-pkg-whitelist=scipy.special