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v1.7.1 - Recommended for uses of bwa_mem.pl

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@keiranmraine keiranmraine released this 17 Apr 11:10
· 412 commits to master since this release

BWA mem still produces pairs marked as proper-pairs that are clearly not. This release adds the 'fixmates' option to the sorting step to clean this up.

Also upgrades biobambam to 0.0.191 for convinience of anyone using this as install route.