Moted major changes and version bumped

ICGC-TCGA-PanCancer · Jan 11, 2016 · 209f4bd · 209f4bd
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commit 209f4bd
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diff --git a/CHANGES.md b/CHANGES.md
@@ -1,3 +1,10 @@
+### 1.11.0
+* bam_stats - new rna switch to give more appropriate insert size stats
+* bam_stats - more robust handling of optional RG header entries
+* bam_stats - allows streaming IO (thanks to @jenniferliddle)
+* bwa_mem.pl - Handle `'` in RG header line/IDs
+* Generally improved version handling and updated versions of some tools.
+
 ### 1.9.1
 * Changed final log folder to include sample name and analysis type, prevents clash when lots of data to same output loc.
 

diff --git a/MANIFEST b/MANIFEST
@@ -1,4 +1,3 @@
-bin/bam_stats
 bin/bam_stats.pl
 bin/bam_to_sra_sub.pl
 bin/bamToBw.pl
@@ -10,9 +9,7 @@ bin/monitor.pl
 bin/xml_to_bas.pl
 c/bam_access.c
 c/bam_access.h
-c/bam_access.o
 c/bam_stats.c
-c/bam_stats.o
 c/dbg.h
 c/khash.h
 CHANGES.md

diff --git a/docs.tar.gz b/docs.tar.gz
diff --git a/lib/PCAP.pm b/lib/PCAP.pm
@@ -24,7 +24,7 @@ use strict;
 use Const::Fast qw(const);
 use base 'Exporter';
 
-our $VERSION = '1.10.0';
+our $VERSION = '1.11.0';
 our @EXPORT = qw($VERSION);
 
 const my $LICENSE =>