HyperionGray · Copilot · Jan 16, 2026 · Jan 16, 2026 · Jan 16, 2026 · Jan 16, 2026
diff --git a/.gitignore b/.gitignore
@@ -153,3 +153,14 @@ db/modules_metadata_base.pstore
 
 # local scratch/log file
 file.txt
+
+# Prevent temporary review/report files in root
+# These should go in docs/reviews/, docs/reports/, or docs/resolution/
+/*_REVIEW*.md
+/*_REPORT*.md
+/*_RESOLUTION*.md
+/*_RESPONSE*.md
+/*_ACTION_ITEMS*.md
+/*_SUMMARY*.md
+/*_COMPLETE*.md
+/*_VERIFICATION*.md
diff --git a/docs/ORGANIZED_DOCS_INDEX.md b/docs/ORGANIZED_DOCS_INDEX.md
@@ -0,0 +1,59 @@
+# Organized Documentation Index
+
+This document provides an index to the reorganized documentation files that were moved from the repository root to maintain a clean project structure.
+
+## Directory Structure
+
+### Reviews (`docs/reviews/`)
+CI/CD and code quality review reports:
+- Amazon Q reviews and action items
+- CI/CD review responses and resolutions
+- Code cleanliness improvements
+- Comprehensive review reports
+
+### Migration (`docs/migration/`)
+Documentation related to the Ruby-to-Python migration:
+- Conversion verification reports
+- MSF Python migration status
+- Python-first naming conventions
+- Ruby removal verification
+
+### Resolution (`docs/resolution/`)
+Issue resolution and completion reports:
+- Individual issue resolutions
+- Round-based completion verification
+- Task completion reports
+
+### Guides (`docs/guides/`)
+User and developer guides:
+- Manual merge guide
+- Startup methods documentation
+- Comprehensive testing guide
+
+### Reports (`docs/reports/`)
+Project reports and analysis:
+- Merge order documentation
+- MSF suite bug fix summaries
+- Testing reports
+- PR merge analysis
+
+## Essential Root-Level Documentation
+
+The following documentation files remain in the repository root for easy access:
+- `README.md` - Main project documentation
+- `CONTRIBUTING.md` - Contribution guidelines
+- `LICENSE.md` - License information
+- `CHANGELOG.md` - Version history
+- `CODE_OF_CONDUCT.md` - Community guidelines
+- `SECURITY.md` - Security policies
+- `QUICKSTART.md` - Quick start guide
+- `TESTING.md` - Testing documentation
+
+## Navigation
+
+To view specific documentation:
+1. Navigate to the appropriate subdirectory based on the topic
+2. Check the file listings above to find relevant documentation
+3. Use GitHub's search feature to find specific content
+
+For website documentation, see `docs/README.md` for information about the docs site at https://docs.metasploit.com/
diff --git a/docs/TODO.md b/docs/TODO.md
@@ -172,3 +172,37 @@ To contribute to any of these items:
 - msfrc environment activation is the recommended usage pattern
 - 4,948 Python modules available
 - All functionality verified working with comprehensive test suite (17/17 tests passing)
+
+---
+
+## CI/CD Review Follow-up (2026-01-16)
+
+### Code Cleanliness - Large Files Analysis ✅
+
+The CI/CD review identified several files exceeding 500 lines. Analysis completed:
+
+**Files That Are Appropriately Large (No Action Needed):**
+
+1. **CVE Exploit Files** (`data/exploits/CVE-2019-12477/epicsax*.ts`) - ✅ Legitimate PoCs
+2. **Core Transpiler Logic** (`ruby2py/py2ruby/transpiler.py`, `tools/ast_transpiler/ast_translator.py`) - ✅ Complex AST transformations
+3. **LLVM Instrumentation** (`lib/msf/util/llvm_instrumentation.py`) - ✅ Specialized domain logic
+4. **Test Files** (`test/test_comprehensive_suite.py`, `test/python_framework/test_*.py`) - ✅ Comprehensive test coverage
+5. **Binary Analysis Tools** (`lib/rex/binary_analysis/*.py`) - ✅ Complex analysis algorithms
+6. **Rootkit Simulator** (`modules/malware/linux/rootkit_simulator.py`) - ✅ Single cohesive class
+
+**Conclusion**: All large files are appropriately sized for their functionality. Splitting would harm logical cohesion and readability.
+
+### Repository Organization - COMPLETED ✅
+
+- [x] Moved 35 temporary review/report markdown files from root to `docs/` subdirectories
+- [x] Organized documentation into logical categories:
+  - `docs/reviews/` - CI/CD and code quality reviews
+  - `docs/migration/` - Ruby-to-Python migration documentation
+  - `docs/resolution/` - Issue resolution reports
+  - `docs/guides/` - User and developer guides
+  - `docs/reports/` - Project reports and analysis
+- [x] Created `docs/ORGANIZED_DOCS_INDEX.md` for easy navigation
+- [x] Updated `.gitignore` to prevent future clutter from temporary review files
+- [x] Root directory now contains only 8 essential documentation files
+
+**Result**: Repository is now clean and well-organized per best practices
diff --git a/MANUAL_MERGE_GUIDE.md → docs/guides/MANUAL_MERGE_GUIDE.md b/MANUAL_MERGE_GUIDE.md → docs/guides/MANUAL_MERGE_GUIDE.md
diff --git a/ROUND_1_README.md → docs/guides/ROUND_1_README.md b/ROUND_1_README.md → docs/guides/ROUND_1_README.md
diff --git a/STARTUP_METHODS.md → docs/guides/STARTUP_METHODS.md b/STARTUP_METHODS.md → docs/guides/STARTUP_METHODS.md
diff --git a/TESTING_COMPREHENSIVE_GUIDE.md → docs/guides/TESTING_COMPREHENSIVE_GUIDE.md b/TESTING_COMPREHENSIVE_GUIDE.md → docs/guides/TESTING_COMPREHENSIVE_GUIDE.md
diff --git a/CONVERSION_VERIFICATION.md → docs/migration/CONVERSION_VERIFICATION.md b/CONVERSION_VERIFICATION.md → docs/migration/CONVERSION_VERIFICATION.md
diff --git a/MSF_PYTHON_MIGRATION_COMPLETE.md → ...igration/MSF_PYTHON_MIGRATION_COMPLETE.md b/MSF_PYTHON_MIGRATION_COMPLETE.md → ...igration/MSF_PYTHON_MIGRATION_COMPLETE.md
diff --git a/PYTHON_FIRST_NAMING.md → docs/migration/PYTHON_FIRST_NAMING.md b/PYTHON_FIRST_NAMING.md → docs/migration/PYTHON_FIRST_NAMING.md
diff --git a/RUBY2PY_CONVERSION_COMPLETE.md → .../migration/RUBY2PY_CONVERSION_COMPLETE.md b/RUBY2PY_CONVERSION_COMPLETE.md → .../migration/RUBY2PY_CONVERSION_COMPLETE.md
diff --git a/RUBY_REMOVAL_VERIFICATION.md → docs/migration/RUBY_REMOVAL_VERIFICATION.md b/RUBY_REMOVAL_VERIFICATION.md → docs/migration/RUBY_REMOVAL_VERIFICATION.md
diff --git a/MERGE_ORDER.md → docs/reports/MERGE_ORDER.md b/MERGE_ORDER.md → docs/reports/MERGE_ORDER.md
diff --git a/MSF_SUITE_BUG_FIX_SUMMARY.md → docs/reports/MSF_SUITE_BUG_FIX_SUMMARY.md b/MSF_SUITE_BUG_FIX_SUMMARY.md → docs/reports/MSF_SUITE_BUG_FIX_SUMMARY.md
diff --git a/MSF_SUITE_TESTING_REPORT.md → docs/reports/MSF_SUITE_TESTING_REPORT.md b/MSF_SUITE_TESTING_REPORT.md → docs/reports/MSF_SUITE_TESTING_REPORT.md
diff --git a/PR_MERGE_ANALYSIS.md → docs/reports/PR_MERGE_ANALYSIS.md b/PR_MERGE_ANALYSIS.md → docs/reports/PR_MERGE_ANALYSIS.md
diff --git a/PR_MERGE_README.md → docs/reports/PR_MERGE_README.md b/PR_MERGE_README.md → docs/reports/PR_MERGE_README.md
diff --git a/TEST_SUITE_COMPLETE.md → docs/reports/TEST_SUITE_COMPLETE.md b/TEST_SUITE_COMPLETE.md → docs/reports/TEST_SUITE_COMPLETE.md
diff --git a/ISSUE_175_RESOLUTION.md → docs/resolution/ISSUE_175_RESOLUTION.md b/ISSUE_175_RESOLUTION.md → docs/resolution/ISSUE_175_RESOLUTION.md
diff --git a/ISSUE_RESOLUTION.md → docs/resolution/ISSUE_RESOLUTION.md b/ISSUE_RESOLUTION.md → docs/resolution/ISSUE_RESOLUTION.md
diff --git a/ISSUE_RESOLUTION_COMPLETE.md → docs/resolution/ISSUE_RESOLUTION_COMPLETE.md b/ISSUE_RESOLUTION_COMPLETE.md → docs/resolution/ISSUE_RESOLUTION_COMPLETE.md
diff --git a/ROUND_1_COMPLETION_VERIFICATION.md → ...lution/ROUND_1_COMPLETION_VERIFICATION.md b/ROUND_1_COMPLETION_VERIFICATION.md → ...lution/ROUND_1_COMPLETION_VERIFICATION.md
diff --git a/ROUND_1_ISSUE_RESOLUTION.md → docs/resolution/ROUND_1_ISSUE_RESOLUTION.md b/ROUND_1_ISSUE_RESOLUTION.md → docs/resolution/ROUND_1_ISSUE_RESOLUTION.md
diff --git a/TASK_COMPLETION_REPORT.md → docs/resolution/TASK_COMPLETION_REPORT.md b/TASK_COMPLETION_REPORT.md → docs/resolution/TASK_COMPLETION_REPORT.md
diff --git a/AMAZON_Q_ACTION_ITEMS_2026_01.md → .../reviews/AMAZON_Q_ACTION_ITEMS_2026_01.md b/AMAZON_Q_ACTION_ITEMS_2026_01.md → .../reviews/AMAZON_Q_ACTION_ITEMS_2026_01.md
diff --git a/AMAZON_Q_REVIEW_2026_01.md → docs/reviews/AMAZON_Q_REVIEW_2026_01.md b/AMAZON_Q_REVIEW_2026_01.md → docs/reviews/AMAZON_Q_REVIEW_2026_01.md
diff --git a/AMAZON_Q_REVIEW_QUICK_REFERENCE.md → ...eviews/AMAZON_Q_REVIEW_QUICK_REFERENCE.md b/AMAZON_Q_REVIEW_QUICK_REFERENCE.md → ...eviews/AMAZON_Q_REVIEW_QUICK_REFERENCE.md
diff --git a/AMAZON_Q_REVIEW_RESPONSE.md → docs/reviews/AMAZON_Q_REVIEW_RESPONSE.md b/AMAZON_Q_REVIEW_RESPONSE.md → docs/reviews/AMAZON_Q_REVIEW_RESPONSE.md
diff --git a/CICD_REVIEW_RESOLUTION.md → docs/reviews/CICD_REVIEW_RESOLUTION.md b/CICD_REVIEW_RESOLUTION.md → docs/reviews/CICD_REVIEW_RESOLUTION.md
diff --git a/CICD_REVIEW_RESPONSE_2026_01_05.md → ...eviews/CICD_REVIEW_RESPONSE_2026_01_05.md b/CICD_REVIEW_RESPONSE_2026_01_05.md → ...eviews/CICD_REVIEW_RESPONSE_2026_01_05.md
diff --git a/CICD_REVIEW_SUMMARY.md → docs/reviews/CICD_REVIEW_SUMMARY.md b/CICD_REVIEW_SUMMARY.md → docs/reviews/CICD_REVIEW_SUMMARY.md
diff --git a/CI_CD_REVIEW_RESPONSE.md → docs/reviews/CI_CD_REVIEW_RESPONSE.md b/CI_CD_REVIEW_RESPONSE.md → docs/reviews/CI_CD_REVIEW_RESPONSE.md
diff --git a/CODE_CLEANLINESS_IMPROVEMENTS.md → .../reviews/CODE_CLEANLINESS_IMPROVEMENTS.md b/CODE_CLEANLINESS_IMPROVEMENTS.md → .../reviews/CODE_CLEANLINESS_IMPROVEMENTS.md
diff --git a/CODE_QUALITY.md → docs/reviews/CODE_QUALITY.md b/CODE_QUALITY.md → docs/reviews/CODE_QUALITY.md
diff --git a/COMPREHENSIVE_REVIEW_REPORT.md → docs/reviews/COMPREHENSIVE_REVIEW_REPORT.md b/COMPREHENSIVE_REVIEW_REPORT.md → docs/reviews/COMPREHENSIVE_REVIEW_REPORT.md
diff --git a/REVIEW_ACTION_ITEMS.md → docs/reviews/REVIEW_ACTION_ITEMS.md b/REVIEW_ACTION_ITEMS.md → docs/reviews/REVIEW_ACTION_ITEMS.md
diff --git a/REVIEW_EXECUTIVE_SUMMARY.md → docs/reviews/REVIEW_EXECUTIVE_SUMMARY.md b/REVIEW_EXECUTIVE_SUMMARY.md → docs/reviews/REVIEW_EXECUTIVE_SUMMARY.md
diff --git a/REVIEW_INDEX.md → docs/reviews/REVIEW_INDEX.md b/REVIEW_INDEX.md → docs/reviews/REVIEW_INDEX.md