emptyDropsWrapper.R bug

[edenisen]

Hi,

Looks like there is a bug in R script. Line 125, ed_param_lower <- opt$verbose where should be I suppose ed_param_lower <- opt$ed_lower

As a result, emptyDrops function seems to be running with lower=1 instead of lower=100 which changes the results dramatically, at least in samples I checked.

[kbergin]

Hi @edenisen -

Thank you so much for spotting and hunting down this bug! We have a pr open #304 and will cut a new release as soon as we can!

[barkasn]

This has been fixed in the current master version and will be available in the next Optimus release.