Added shanon entropy plot

Hugenotte585 · Jul 2, 2023 · 30ea7aa · 30ea7aa
1 parent d7cde07
commit 30ea7aa
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Showing 14 changed files with 7,114 additions and 4 deletions.
diff --git a/encoding_utils/__pycache__/sequence_encoders.cpython-39.pyc b/encoding_utils/__pycache__/sequence_encoders.cpython-39.pyc
diff --git a/encoding_utils/__pycache__/sequence_operations.cpython-39.pyc b/encoding_utils/__pycache__/sequence_operations.cpython-39.pyc
diff --git a/encoding_utils/__pycache__/sequence_utils.cpython-39.pyc b/encoding_utils/__pycache__/sequence_utils.cpython-39.pyc
diff --git a/helpers/__pycache__/metrics.cpython-39.pyc b/helpers/__pycache__/metrics.cpython-39.pyc
diff --git a/helpers/__pycache__/misc.cpython-39.pyc b/helpers/__pycache__/misc.cpython-39.pyc
diff --git a/helpers/__pycache__/train_eval.cpython-39.pyc b/helpers/__pycache__/train_eval.cpython-39.pyc
diff --git a/helpers/plots.py b/helpers/plots.py
@@ -774,6 +774,9 @@ def __init__(self,
         retreived = 0
         self.non_motif_ranges = []
         np.random.seed(42)
+        if optional_config is None:
+            optional_config = {}
+            optional_config["exclude_random"] = []
         if n_random_kmers is None:
             n_random_kmers = len(self.motif_ids)
         while (retreived<n_random_kmers):

diff --git a/models/__pycache__/__init__.cpython-39.pyc b/models/__pycache__/__init__.cpython-39.pyc
diff --git a/models/__pycache__/dss.cpython-39.pyc b/models/__pycache__/dss.cpython-39.pyc
diff --git a/models/__pycache__/spec_dss.cpython-39.pyc b/models/__pycache__/spec_dss.cpython-39.pyc