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getLDS function error : Error in httr2::req_perform(): #116

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@wangxudong1234

Description

@wangxudong1234

when I run getLDS function, the error appear:

z2h <- getLDS(attributes = c("external_gene_name"),

  •           filters = "external_gene_name", 
    
  •           values = unique(zebrafish.anno$g_name), mart = ensembl_zebrafish,
    
  •           attributesL = c("external_gene_name","chromosome_name"), martL = ensembl_human)
    

Error in httr2::req_perform():
! HTTP 500 Internal Server Error.
Run rlang::last_trace() to see where the error occurred.

rlang::last_trace()
<error/httr2_http_500>
Error in httr2::req_perform():
! HTTP 500 Internal Server Error.


Backtrace:

  1. └─biomaRt::getLDS(...)
  2. └─biomaRt:::.submitQueryXML(...)
  3. └─httr2::req_perform(req)
    

Run rlang::last_trace(drop = FALSE) to see 3 hidden frames.

rlang::last_trace(drop = FALSE)
<error/httr2_http_500>
Error in httr2::req_perform():
! HTTP 500 Internal Server Error.


Backtrace:

  1. └─biomaRt::getLDS(...)
  2. └─biomaRt:::.submitQueryXML(...)
  3. └─httr2::req_perform(req)
    
  4.   └─httr2:::handle_resp(req, resp, error_call = error_call)
    
  5.     └─httr2:::resp_abort(resp, req, body, call = error_call)
    
  6.       └─rlang::abort(...)
    

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