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@HiPCTProject

HiP-CT Project

Code associated with hierarchical phase contrast tomography
README.md

HiP-CT Project

This organisation contains codes used internally within the HiP-CT project.

Where possible we've made these codes public so others can read and re-use. None of the code is designed to be general purpose or scientist-facing.

For public-facing codes for working with HiP-CT data in the Human Organ Atlas, see https://github.com/HumanOrganAtlas.

Popular repositories Loading

  1. Tomo_Recon Tomo_Recon Public archive

    MATLAB 7

  2. stack-to-chunk stack-to-chunk Public

    Convert stacks of images to chunked datasets

    Python 3 1

  3. rebin rebin Public

    Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

    Python

  4. downsample-jp2s downsample-jp2s Public

    Script to create binned JPEG2000 datasets for HiP-CT data

    Python

  5. contrast-lims contrast-lims Public

    Script for calculating contrast limits for HiP-CT datasets

    Python

  6. hipct-reg hipct-reg Public

    Code to register HiP-CT volumes of interest to full organ datasets

    Python

Repositories

Showing 10 of 10 repositories
  • stack-to-chunk Public

    Convert stacks of images to chunked datasets

    HiPCTProject/stack-to-chunk’s past year of commit activity
    Python 3 BSD-3-Clause 1 0 4 Updated Nov 11, 2024
  • hipct-reg Public

    Code to register HiP-CT volumes of interest to full organ datasets

    HiPCTProject/hipct-reg’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 3 Updated Nov 11, 2024
  • rebin Public

    Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

    HiPCTProject/rebin’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 2 Updated Nov 11, 2024
  • mask-ome-zarr Public

    A pipeline to apply a mask to an OME-zarr dataset

    HiPCTProject/mask-ome-zarr’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Oct 29, 2024
  • downsample-jp2s Public

    Script to create binned JPEG2000 datasets for HiP-CT data

    HiPCTProject/downsample-jp2s’s past year of commit activity
    Python 0 BSD-3-Clause 0 2 0 Updated Oct 15, 2024
  • Kaggle_skeleton_analyses Public

    This is a repository for the Kaggle skeleton analysis pipeline

    HiPCTProject/Kaggle_skeleton_analyses’s past year of commit activity
    MATLAB 0 0 0 0 Updated Aug 12, 2024
  • contrast-lims Public

    Script for calculating contrast limits for HiP-CT datasets

    HiPCTProject/contrast-lims’s past year of commit activity
    Python 0 BSD-2-Clause 0 1 0 Updated Aug 1, 2024
  • .github Public
    HiPCTProject/.github’s past year of commit activity
    0 0 0 0 Updated May 21, 2024
  • data-speeds Public

    Comparing image file I/O

    HiPCTProject/data-speeds’s past year of commit activity
    Python 0 0 0 0 Updated Apr 6, 2024
  • Tomo_Recon Public archive
    HiPCTProject/Tomo_Recon’s past year of commit activity
    MATLAB 7 GPL-3.0 0 0 0 Updated Jul 6, 2023

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