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Description
Helm
Fix omop lite volumes
Publish documentation
The only tables mapper cares about:
Concept
Vocabulary
Domain
ConceptRelationship
ConceptAncestor
Update CLI to get a --required-tables option ?
Add an init container ? / minio ?
Update CLI to enable updating a CDM
Run omop-lite cli in k8 job with --required tables for the above tables
It will pause - or fail ? if those tables csv are not provided to it.
Get an init container to provide those files to it
The init container should connect to Minio
So:
- user runs the k8 stack
- if they want to load their own omop data
- they will override
omop-liteto besynthetic=false - it will then pause until those files exist for it to load
- user will upload their vocab files to the minio
- the init container will serve it from minio to omop-lite
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