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Kubernetes fixes #89

@anwarfg

Description

@anwarfg

Helm
Fix omop lite volumes
Publish documentation

The only tables mapper cares about:

Concept
Vocabulary
Domain
ConceptRelationship
ConceptAncestor

Update CLI to get a --required-tables option ?
Add an init container ? / minio ?
Update CLI to enable updating a CDM

Run omop-lite cli in k8 job with --required tables for the above tables
It will pause - or fail ? if those tables csv are not provided to it.
Get an init container to provide those files to it
The init container should connect to Minio

So:

  • user runs the k8 stack
  • if they want to load their own omop data
  • they will override omop-lite to be synthetic=false
  • it will then pause until those files exist for it to load
  • user will upload their vocab files to the minio
  • the init container will serve it from minio to omop-lite

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