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Update hg38 data download to use curl instead of gsutil. #32

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merged 1 commit into from
Dec 4, 2023

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jondeaton
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@exnx exnx left a comment

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thanks for contributing! however, the curl doesn't work for me. I get curl: (23) Failed writing body (0 != 364).

@jondeaton jondeaton force-pushed the dev branch 2 times, most recently from 93a7f3f to 695185e Compare December 4, 2023 03:40
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Interesting, I think this error is probably coming because the data/hg38 directory wasn't there? I fixed the mkdir command to use the -p so it correctly makes this directory. Working for me once this directory is there.

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exnx commented Dec 4, 2023

oh awesome, ok that worked! I'm wondering, how does this work without having to pay for the download? Someone is hosting it and being charged, right?

Thank you!

@exnx exnx merged commit d553021 into HazyResearch:main Dec 4, 2023
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Good point, actually - I'm not quite sure. I found it these here: https://github.com/calico/basenji/blob/master/manuscripts/akita/tutorial.ipynb which seems to be from a Calico project.

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2 participants