update configs with correct name for short_filter_order

HazyResearch · Oct 31, 2023 · 363939a · 363939a
1 parent bba7c81
commit 363939a
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Showing 10 changed files with 10 additions and 10 deletions.
diff --git a/configs/experiment/hg38/chromatin_profile.yaml b/configs/experiment/hg38/chromatin_profile.yaml
@@ -19,7 +19,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: 1026  # required to be set the same as the pretrained model if using, don't forget the +2!  ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/genomic_benchmark.yaml b/configs/experiment/hg38/genomic_benchmark.yaml
@@ -31,7 +31,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: 1026  # required to be set the same as the pretrained model if using, don't forget the +2!  ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/genomic_benchmark_load_finetuned_model.yaml b/configs/experiment/hg38/genomic_benchmark_load_finetuned_model.yaml
@@ -19,7 +19,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: 1026  # required to be set the same as the pretrained model if using, don't forget the +2!  ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/genomic_benchmark_scratch.yaml b/configs/experiment/hg38/genomic_benchmark_scratch.yaml
@@ -44,7 +44,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: 1026  # required to be set the same as the pretrained model if using, don't forget the +2!  ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/hg38_hyena.yaml b/configs/experiment/hg38/hg38_hyena.yaml
@@ -21,7 +21,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/hg38_hyena_icl.yaml b/configs/experiment/hg38/hg38_hyena_icl.yaml
@@ -22,7 +22,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/hg38_hyena_seqlen_warmup_reload.yaml b/configs/experiment/hg38/hg38_hyena_seqlen_warmup_reload.yaml
@@ -21,7 +21,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/nucleotide_transformer.yaml b/configs/experiment/hg38/nucleotide_transformer.yaml
@@ -20,7 +20,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: 1026  # required to be set the same as the pretrained model if using, don't forget the +2!  ${eval:${dataset.max_length}+2}
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/species.yaml b/configs/experiment/hg38/species.yaml
@@ -27,7 +27,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: 1026
     modulate: True
     w: 10

diff --git a/configs/experiment/hg38/species_seqlen_warmup_reload.yaml b/configs/experiment/hg38/species_seqlen_warmup_reload.yaml
@@ -27,7 +27,7 @@ model:
     _name_: hyena
     emb_dim: 5
     filter_order: 64
-    local_order: 3
+    short_filter_order: 3
     l_max: 1026
     modulate: True
     w: 10