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Avoid potentially large stack allocation, clean up int usage #282

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merged 1 commit into from
Mar 15, 2024

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cjw85
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@cjw85 cjw85 commented Mar 13, 2024

I'm starting to investigate various memory errors we have seen with clair3 code. This commit is a small one have getting acquianted with the bits full alignment feature code (the pileup one seems very familiar 🤔 🤣 ).

My compiler is a bit happier after these changes.

@aquaskyline
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Thanks for the PR. Sorry for the delay, we also have a working fix but will integrate it with yours. We shall release a new version with this and a few other fixes by this week.

@zhengzhenxian zhengzhenxian merged commit 751307f into HKU-BAL:main Mar 15, 2024
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Merged into v1.0.6.

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Stack overflow seg fault in calculate_clair3_full_alignment
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