fix: adjust NDR threshold behavior. Previously, NDR = 1 would overrid…#559

Merged

SuiYue-2308 merged 3 commits into

devel_pre_v4from

devel_pre_v4_fix_NDR_1

Apr 17, 2026

Commits on Apr 15, 2026

fix: adjust NDR threshold behavior. Previously, NDR = 1 would override `remove.subset` and `min.sampleNumber`. Now, NDR = 0.999 and NDR = 1 produce identical results except for the NDR threshold it…
SuiYue-2308
committed

Commits on Apr 16, 2026

Remove unused includeRef parameter from setNDR()
SuiYue-2308
committed
Fix fusion mode to include subset and low-count transcripts after NDR fix
SuiYue-2308
committed