zoo-calrissian-runner

Python library for bridging zoo execution context and calrissian

Environment variables

• STORAGE_CLASS: RWX storage class
• CALRISSIAN_IMAGE: Calrissian container image
• DEFAULT_VOLUME_SIZE: default size for RWX storage volume
• MAX_CORES: maximum number of cores to use during a Calrissian Job to be used if the CWL does not set the resource requirements
• MAX_RAM: maximum number of RAM to use during a Calrissian Job to be used if the CWL does not set the resource requirements

CWL wrapper templates:

• WRAPPER_STAGE_IN
• WRAPPER_STAGE_OUT
• WRAPPER_STAGE_MAIN
• WRAPPER_STAGE_RULES

Running the tests

Add a tests/.env file including the values with::

CR_USERNAME=""
CR_TOKEN=""
CR_ENDPOINT="https://index.docker.io/v1/"
CR_EMAIL=""
AWS_SERVICE_URL=""
AWS_REGION=""
AWS_ACCESS_KEY_ID=""
AWS_SECRET_ACCESS_KEY=""

KUBECONFIG=""
STORAGE_CLASS=""

DEFAULT_MAX_CORES=8
DEFAULT_MAX_RAM=1024
DEFAULT_VOLUME_SIZE=10000 # mebibytes (2**20)


ADES_STAGEOUT_OUTPUT=""