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Merged
merged 13 commits into from
Sep 18, 2021
Merged

Use mamba to install Continuous Integration dependencies #841

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79cd804
Use mamba to install Continuous Integration dependencies
weiji14 Feb 6, 2021
5612a68
Move dev dependency specification to environment.yml
weiji14 Feb 6, 2021
2dd0890
Merge branch 'master' into mambaforge
weiji14 Feb 18, 2021
4b93f4d
Temporarily enable Windows Python 3.9 CI tests in draft mode
weiji14 Feb 18, 2021
bf1e97d
Use the cache action
seisman Feb 19, 2021
70f5921
Revert "Use the cache action"
seisman Feb 19, 2021
1595cb1
Merge branch 'main' into mambaforge
weiji14 Sep 17, 2021
7543a26
Set strict channel priority to conda-forge only with no
weiji14 Sep 17, 2021
e2dbf0c
Use mamba on GMT Dev Tests CI build
weiji14 Sep 17, 2021
b962733
Use mamba in CI docs and Cache Data workflows
weiji14 Sep 17, 2021
deeafad
Pin gmt dev version to 6.3 on Windows CI
weiji14 Sep 18, 2021
56e9433
Merge branch 'main' into mambaforge
weiji14 Sep 18, 2021
504fadc
Revert "Temporarily enable Windows Python 3.9 CI tests in draft mode"
weiji14 Sep 18, 2021
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14 changes: 9 additions & 5 deletions .github/workflows/cache_data.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -24,17 +24,21 @@ jobs:
# fecth all history so that setuptools-scm works
fetch-depth: 0

# Setup Miniconda
- name: Setup Miniconda
# Install Mambaforge with conda-forge dependencies
- name: Setup Mambaforge
uses: conda-incubator/setup-miniconda@v2.1.1
with:
channels: conda-forge
miniconda-version: "latest"
channels: conda-forge,nodefaults
channel-priority: strict
miniforge-version: latest
miniforge-variant: Mambaforge
mamba-version: "*"
use-mamba: true

# Install GMT and other required dependencies from conda-forge
- name: Install dependencies
run: |
conda install gmt=6.2.0 \
mamba install gmt=6.2.0 \
numpy pandas xarray netCDF4 packaging matplotlib

# Install the package that we want to test
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16 changes: 10 additions & 6 deletions .github/workflows/ci_docs.yml
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Expand Up @@ -54,25 +54,29 @@ jobs:
# fecth all history so that setuptools-scm works
fetch-depth: 0

# Setup Miniconda
- name: Setup Miniconda
# Install Mambaforge with conda-forge dependencies
- name: Setup Mambaforge
uses: conda-incubator/setup-miniconda@v2.1.1
with:
activate-environment: pygmt
python-version: ${{ matrix.python-version }}
channels: conda-forge
miniconda-version: "latest"
channels: conda-forge,nodefaults
channel-priority: strict
miniforge-version: latest
miniforge-variant: Mambaforge
mamba-version: "*"
use-mamba: true

# Install GMT and other required dependencies from conda-forge
- name: Install dependencies
run: |
conda install gmt=6.2.0 numpy pandas xarray netCDF4 packaging \
mamba install gmt=6.2.0 numpy pandas xarray netCDF4 packaging \
ipython make myst-parser geopandas \
sphinx sphinx-copybutton sphinx-gallery sphinx_rtd_theme

# Show installed pkg information for postmortem diagnostic
- name: List installed packages
run: conda list
run: mamba list

# Download cached remote files (artifacts) from GitHub
- name: Download remote data from GitHub
Expand Down
16 changes: 10 additions & 6 deletions .github/workflows/ci_tests.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -77,19 +77,23 @@ jobs:
# fecth all history so that setuptools-scm works
fetch-depth: 0

# Setup Miniconda
- name: Setup Miniconda
# Install Mambaforge with conda-forge dependencies
- name: Setup Mambaforge
uses: conda-incubator/setup-miniconda@v2.1.1
with:
activate-environment: pygmt
python-version: ${{ matrix.python-version }}
channels: conda-forge
miniconda-version: "latest"
channels: conda-forge,nodefaults
channel-priority: strict
miniforge-version: latest
miniforge-variant: Mambaforge
mamba-version: "*"
use-mamba: true

# Install GMT and other required dependencies from conda-forge
- name: Install dependencies
run: |
conda install gmt=6.2.0 numpy=${{ matrix.numpy-version }} \
mamba install gmt=6.2.0 numpy=${{ matrix.numpy-version }} \
pandas xarray netCDF4 packaging \
${{ matrix.optional-packages }} \
coverage[toml] dvc ipython make \
Expand All @@ -98,7 +102,7 @@ jobs:

# Show installed pkg information for postmortem diagnostic
- name: List installed packages
run: conda list
run: mamba list

# Download cached remote files (artifacts) from GitHub
- name: Download remote data from GitHub
Expand Down
16 changes: 10 additions & 6 deletions .github/workflows/ci_tests_dev.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -71,19 +71,23 @@ jobs:
# fecth all history so that setuptools-scm works
fetch-depth: 0

# Setup Miniconda
- name: Setup Miniconda
# Install Mambaforge with conda-forge dependencies
- name: Setup Mambaforge
uses: conda-incubator/setup-miniconda@v2.1.1
with:
activate-environment: pygmt
python-version: ${{ matrix.python-version }}
channels: conda-forge
miniconda-version: "latest"
channels: conda-forge,nodefaults
channel-priority: strict
miniforge-version: latest
miniforge-variant: Mambaforge
mamba-version: "*"
use-mamba: true

# Install dependencies from conda-forge
- name: Install dependencies
run: |
conda install ninja cmake libblas libcblas liblapack fftw gdal geopandas \
mamba install ninja cmake libblas libcblas liblapack fftw gdal geopandas \
ghostscript libnetcdf hdf5 zlib curl pcre make dvc
pip install --pre numpy pandas xarray netCDF4 packaging \
ipython pytest-cov pytest-mpl pytest>=6.0 sphinx-gallery \
Expand All @@ -98,7 +102,7 @@ jobs:
if: runner.os != 'Windows'

- name: Install GMT dev version from conda-forge (Windows)
run: conda install -c conda-forge/label/dev gmt
run: mamba install -c conda-forge/label/dev gmt=6.3
if: runner.os == 'Windows'

# Download cached remote files (artifacts) from GitHub
Expand Down