decima version=0.2.2, gene_expression prediction, sequence shifting and fine-tuning #19
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* enable finetune via cli * split input and output directories * add mygene * added ensembl * added N padding * add more params * added args to cli finetune * add csv logging * add csv logging * add run name to checkpoints * gene pearson metric * training 202506 * added new params * added topk * reset unnecessary changes * reset unnecessary changes * reset unnecessary changes * reset unnecessary changes * reset unnecessary changes * fixed savek typo * more useful print * finetuning updates --------- Co-authored-by: Muhammed Hasan Celik <celik.muhammed_hasan@gene.com>
avantikalal
reviewed
Jul 21, 2025
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