bulkpy

Helpers to work with bulk omics data using the scverse

Getting started

Please refer to the documentation, in particular, the API documentation.

Installation

You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge.

There are several alternative options to install bulkpy:

1. Install the latest development version:

pip install git+https://github.com/votti/bulkpy.git@main

Concept

This library supports the use of mudata for bulk multi-omics datasets. Here it mainly contains functions to suppor working across the omic layers. It comes with the bulkR companion R package that is a thin wrapper based on reticulate. Application logic should stay in bulkpy.

Release notes

See the changelog.

Contact

If you found a bug, please use the issue tracker.

Citation

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