Overall p-value for model

[Abbie-Williams]

Hi,

I was wondering how to find the overall p-value for a model? So, if I have understood this correctly, a GLM is ran for each OTU according to the variables we give. In the results, we see the p-value for the level(s) of that variable compared to the reference level. Is there a way to see the overall model p-value for each OTU, rather than for individual comparisons?

Thanks,

Abbie

[FrederickHuangLin]

Hi @Abbie-Williams,

If you specify the group variable and set global = TRUE, the output of res_global is what you are looking for.

Best,
Huang