v0.99.2-alpha

dominoSignal v0.99.2-alpha: Bioconductor Compatibility Updates

Name change

Users can now download and install package dominoSignal which has been renamed to avoid confusion with the existing (and unrelated) domino package on CRAN.

Bioconductor Compatibility

• Users can now use dominoSignal with other Bioconductor packages, such as SingleCellExperiment
• Download and installation of the package now utilizes caching for faster performance
• Bioconductor recommended practices for coding style have been implemented to improve code consistency within the package.

Deprecations

Package dependencies on Seurat have been removed.

Full Changelog: v0.2.2-alpha...v0.99.2-alpha

v0.2.2

Linkage functions

• Addition of new class to summarize linkages in objects
• Addition of helper functions to count linkages and compare between objects
• Plotting function for differential linkages

Package structure

• Adjustments made to meet BioConductor standards

domino2 v0.2.1-alpha

domino2 initial development release

This is an initial development release for domino2. Is not intended for community use due to the rapid development and implementation of new features, but serves as a stable reference if domino2 is to be used in an analysis while the package is still under development. To view the major changes made from domino2 as compared to the original domino package, please see the notes here. They consist primarily of bugfixes, restructuring of the domino object class to ensure reliable results, and the addition of plotting functions.