Next generation FFT implementation for ROCm

Fulgor is a fast and space-efficient colored de Bruijn graph index.

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

the pangenome graph builder

Supercharge Your Model Training

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

What you need to process the Quarterly DepMap-Omics releases from Terra

Foldseek enables fast and sensitive comparisons of large structure sets.

Apache Parquet

Open source code for AlphaFold.

[CVPR2024] Adapting Visual-Language Models for Generalizable Anomaly Detection in Medical Images

The generic genome-scale metabolic model of Homo sapiens

MMseqs2: ultra fast and sensitive search and clustering suite

The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"

Ray is a unified framework for scaling AI and Python applications. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

Improving the precision oncology pipeline by providing binding affinity purtubations predictions on a pirori identified cancer driver genes.

High-Resolution Image Synthesis with Latent Diffusion Models

AutoDock Vina

GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Diffusion models of protein structure; trigonometry and attention are all you need!

Code for running RFdiffusion

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

Spatial alignment of single cell transcriptomic data.