FHR-Citation

Information on Citations of FHR

Citing the Validation Tool

cite the validation tool when directly interacting with the tool or library The APA citation for the FHR validation/converter software is:

Molik, D., & Wright, A. FHR File Converster [Computer software]. https://github.com/FAIR-bioHeaders/FHR-File-Converter

Or in bibtex:

% Citation For FHR Validation/Converter Software
@software{FHR_File_Converter,
    author = {Molik, David and Wright, Adam},
    year = {2023},
    license = {PDDL-1.0},
    title = {{FHR File Converster}},
    url = {https://github.com/FAIR-bioHeaders/FHR-File-Converter},
    doi = {10.5281/zenodo.6762547}
}

Citing the Specification itself

cite the specification when directly interacting with the specification (pull requests, comments on schema) The APA citation for the FHR specification is:

Molik, D., & Wright, A.  FHR Specification [Data set]. https://github.com/FAIR-bioHeaders/FHR-Specification

Or in bibtex:

% Citation For FHR Specification
@misc{FHR_Specification,
    author = {Molik, David and Wright, Adam},
    year = {2023},
    title = {{FHR Specification}},
    url = {https://github.com/FAIR-bioHeaders/FHR-Specification},
    doi = {10.5281/zenodo.6762549}
}

Citing the Article

(best option) cite the article talking about the effort, or want a broad citation of FHR The APA citation for the FHR Article is:

Adam Wright, Mark D Wilkinson, Christopher Mungall, Scott Cain, Stephen Richards, Paul Sternberg, Ellen Provin, Jonathan L Jacobs, Scott Geib, Daniela Raciti, Karen Yook, Lincoln Stein, David C Molik, FAIR Header Reference genome: a TRUSTworthy standard, Briefings in Bioinformatics, Volume 25, Issue 3, May 2024, bbae122, https://doi.org/10.1093/bib/bbae122

Or in bibtex:

% Citation For FHR Article
@article{Wright2024,
  title = {FAIR Header Reference genome: a TRUSTworthy standard},
  volume = {25},
  ISSN = {1477-4054},
  url = {http://dx.doi.org/10.1093/bib/bbae122},
  DOI = {10.1093/bib/bbae122},
  number = {3},
  journal = {Briefings in Bioinformatics},
  publisher = {Oxford University Press (OUP)},
  author = {Wright,  Adam and Wilkinson,  Mark D and Mungall,  Christopher and Cain,  Scott and Richards,  Stephen and Sternberg,  Paul and Provin,  Ellen and Jacobs,  Jonathan L and Geib,  Scott and Raciti,  Daniela and Yook,  Karen and Stein,  Lincoln and Molik,  David C},
  year = {2024},
  month = mar
}