Always build htslib without the libdeflate library#1
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dengste wants to merge 1 commit intoEvotec-Bioinformatics:masterfrom
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Always build htslib without the libdeflate library#1dengste wants to merge 1 commit intoEvotec-Bioinformatics:masterfrom
dengste wants to merge 1 commit intoEvotec-Bioinformatics:masterfrom
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If libdeflate is installed on the host, the configure script for htslib will pick it up and link with it, leading to undefined symbols in the final link since -ldeflate is missing from PKG_LIBS. We also cannot simply add it to PKG_LIBS, since then we would get an error on hosts where libdeflate is unavailable, so just configure htslib without libdeflate support.
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If libdeflate is installed on the host, the configure script for htslib will
pick it up and link with it, leading to undefined symbols in the final link
since -ldeflate is missing from PKG_LIBS. We also cannot simply add it to
PKG_LIBS, since then we would get an error on hosts where libdeflate is
unavailable, so just configure htslib without libdeflate support.