Bernhard Haubold, Linda Krause, Thomas Horn, Beatriz Vieira Mourato, Peter Pfaffelhuber
Recombination detection Using SHustrings as further described here.
rush depends on the Gnu scientific library and the divsufsort
library. On Debian-like systems we installed these with
sudo apt install libgsl-dev libdivsufsort-dev
On macOS we used
brew install libdivsufsort gsl
Compile the sources using
make
the executable rush is now in the directory bin and can be tested
with
make test
The command make doc generates the manual doc/rushDoc.pdf.
GNU General Public License, https://www.gnu.org/licenses/gpl.html