Add profiling

.github/workflows/pythonapp.yml

@@ -27,33 +27,25 @@ jobs:
         python-version: 3.8
     - name: Install dependencies
       run: |
-        pip install nose numpy scipy tabulate pandas pyyaml requests parameterized matplotlib seaborn mkdocs
+        pip install nose numpy scipy tabulate pandas pyyaml requests parameterized matplotlib seaborn mkdocs pandas-profiling
     - name: Test with nose
       run: |
         nosetests -s -v
-    - name: Set deploy variables
-      run: |
-        BRANCH_REF=${{github.head_ref || github.ref}}
-        echo "::set-env name=BRANCH::${BRANCH_REF##*/}"
-        git config --local user.name 'github-actions[bot]'
-        git config --local user.email 'github-actions[bot]@users.noreply.github.com'
-    - name: Deploy GitHub Pages
+
+    - name: Generate profiling reports
       run: |
-        mkdocs gh-deploy
-
-    #- name: Generate readme figures
-      #run: |
-        #python -m pmlb.update_dataset_readmes
-    #- name: Set deploy variables
-      #run: |
-        #BRANCH_REF=${{github.head_ref || github.ref}}
-        #echo "::set-env name=BRANCH::${BRANCH_REF##*/}"
-    #- name: Deploy
-      #uses: peaceiris/actions-gh-pages@v3
-      #with:
-        # external_repository: ${{ github.repository }}
-        #github_token: ${{ secrets.GITHUB_TOKEN }}
-        #publish_dir: .
-        #publish_branch: ${{ env.BRANCH }}
-        # without keep_files, .github/workflows/pythonapp.yml was removed
-        #keep_files: true
+        python -m pmlb.profiling
+
+    - name: Build
+      run: mkdocs build
+
+    - run: ls -lhR docs/
+
+    - name: Deploy
+      uses: peaceiris/actions-gh-pages@v3
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: docs
+        # keep existing files if no changes, unless commit message has regenerate_profiles
+        keep_files: ${{ env.regenerate_profiles == null }}
+

.gitignore

@@ -90,3 +90,15 @@ ENV/
 
 # test notebook
 test*.ipynb
+.Rproj.user
+
+# test R scripts
+r-scripts/
+.DS_Store
+.Rhistory
+penn-ml-benchmarks.Rproj
+datasets/.DS_Store
+
+# mkdocs
+docs/
+docs_sources/profile/