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Pull requests: Ensembl/VEP_plugins

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Pull requests list

Added RefSeqHGVS
#1 by reece was closed Apr 20, 2017 Loading…
3 new modules for the collection?
#2 by duartemolha was closed Apr 20, 2017 Loading…
Update RankFilter.pm
#5 by konradjk was merged Jan 22, 2015 Loading…
Update CADD.pm
#9 by fcunningham was merged Jul 6, 2015 Loading…
Update Condel.pm
#10 by fcunningham was merged Jul 6, 2015 Loading…
Bug fixes for dbNSFP and Downstream
#19 by JohnMCMa was merged Jul 5, 2016 Loading…
Fix dbNSFP parse the wrong readme file
#20 by tiratatp was merged Jul 27, 2016 Loading…
Change plugin URLs to point at release 85
#27 by sambrightman was merged Aug 25, 2016 Loading…
Adding 3'UTR to translation prediction sequence
#31 by JohnMCMa was merged Sep 19, 2016 Loading…
Add the possibility to query LOVD on GRCh38 (hg38)
#34 by ens-lgil was merged Oct 17, 2016 Loading…
Create PON_P2.pm
#36 by abhisheknrl was merged Dec 5, 2016 Loading…
Typo
#38 by ens-hsr was merged Dec 20, 2016 Loading…
look in SQLite db if results for both SIFT & PolyPhen are not in the …
#39 by sarahhunt was merged Feb 9, 2017 Loading…
Add plugin for pLI on ExAC data
#41 by helensch was merged Feb 17, 2017 Loading…
2
Change script name to vep
#42 by helensch was merged Feb 28, 2017 Loading…
NearestGene: Fix "ERROR: Could not get gene adaptor"
#45 by mimame was merged May 22, 2017 Loading…
some updates for 91
#52 by willmclaren was merged Nov 9, 2017 Loading…
Correction to NAME in perldoc
#53 by helensch was merged Nov 15, 2017 Loading…
add MTR plugin
#54 by willmclaren was merged Dec 11, 2017 Loading…
plugin to return reference bases used in longform HGVS transcript ann…
#55 by sarahhunt was closed Dec 13, 2017 Loading…
plugin to return reference bases used in longform HGVS transcript ann…
#56 by sarahhunt was merged Dec 13, 2017 Loading…
add plugin config entry for REVEL
#60 by willmclaren was merged Jan 22, 2018 Loading…
Yearly copyright update
#61 by ens-lgil was merged Jan 22, 2018 Loading…
Plugin config updates for 92
#62 by ens-lgil was merged Jan 22, 2018 Loading…
Updated SameCodon plugin to work with new VEP
#64 by aparton was merged Mar 29, 2018 Loading…
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