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Pull requests: EngreitzLab/ENCODE_rE2G

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Pull requests list

Optimization
#1 by atancoder was merged Aug 17, 2023 Loading…
change to tsv file name
#3 by atancoder was merged Aug 28, 2023 Loading…
3
fix results dir output filepath
#4 by atancoder was merged Aug 28, 2023 Loading…
Additional features to process scATAC IGVF datasets
#6 by atancoder was merged Sep 11, 2023 Loading…
Stats
#7 by atancoder was merged Sep 14, 2023 Loading…
Add ABC as a git submodule
#8 by atancoder was merged Oct 23, 2023 Loading…
prepare for submodule
#11 by atancoder was merged Dec 9, 2023 Loading…
update memory usage
#13 by atancoder was merged Dec 14, 2023 Loading…
support qc plots across all biosamples
#14 by atancoder was merged Dec 14, 2023 Loading…
rename score
#15 by mayasheth was merged Dec 19, 2023 Loading…
add model training workflow
#16 by mayasheth was merged Dec 26, 2023 Loading…
6
edit feature table scripts
#17 by mayasheth was merged Dec 21, 2023 Loading…
7
fix bugs that prevented snakemake from running
#18 by atancoder was merged Dec 22, 2023 Loading…
extend -> append
#19 by mayasheth was merged Jan 2, 2024 Loading…
Single chr
#20 by mayasheth was merged Jan 3, 2024 Loading…
fix typo
#21 by mayasheth was merged Jan 3, 2024 Loading…
update model directory as config parameter
#22 by mayasheth was merged Jan 3, 2024 Loading…
fix model selection code
#23 by mayasheth was merged Jan 3, 2024 Loading…
make LR parameters customizable in training workflow
#24 by mayasheth was merged Feb 9, 2024 Loading…
4
add multiome megamap model path
#25 by mayasheth was merged Feb 9, 2024 Loading…
update trained models
#26 by mayasheth was merged Feb 9, 2024 Loading…
Fix feature analysis
#27 by mayasheth was merged Feb 10, 2024 Loading…
allow user to specify model dir directly
#28 by mayasheth was merged Feb 12, 2024 Loading…
3
Implement benchmarking
#29 by mayasheth was merged Feb 13, 2024 Loading…
2
Delete workflow/scripts/__pycache__ directory
#30 by mayasheth was merged Feb 13, 2024 Loading…
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