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How to use jax-unirep throught GPU to embedding protein sequences. Now, it is very slow using CPU.

Status: Open.

#120 In ElArkk/jax-unirep;

· shufangwu opened on Jan 20, 2024

How to accelerate the encoding time when using jax-unirep?

Status: Open.

#119 In ElArkk/jax-unirep;

· wushufang opened on May 29, 2023

ModuleNotFoundError: No module named 'jax.example_libraries'

Status: Open.

#118 In ElArkk/jax-unirep;

· MohmedSoudy opened on Oct 23, 2022

Ask

Status: Open.

#115 In ElArkk/jax-unirep;

· GeorgyChistov opened on May 29, 2022

Reverse <code>jax_unirep.get_reps(seq)</code>

Status: Open.

#114 In ElArkk/jax-unirep;

· mehradans92 opened on Apr 30, 2022

Clear Map for on top classification with evotuned weights

Status: Open.

#113 In ElArkk/jax-unirep;

· mkd1996 opened on Apr 25, 2022

Training classification model on top of UniRep

Status: Open.

#112 In ElArkk/jax-unirep;

· kvetab opened on Dec 26, 2021

Rewrite <code>get_reps</code> to allow users to obtain reps from "256" and "64" models

Status: Open.

#111 In ElArkk/jax-unirep;

· ericmjl opened on Oct 2, 2021

Regression in v2: Embedding for <code>SEQWENCE</code> changed, while embedding for <code>PROTEIN</code> did not

Status: Open.

#107 In ElArkk/jax-unirep;

· konstin opened on Mar 12, 2021

[DOC] Add annotation on how to install JAX compiled for GPU

Status: Open.

#81 In ElArkk/jax-unirep;

· ericmjl opened on Sep 28, 2020

Non-standard Amino Acids

Status: Open.

#69 In ElArkk/jax-unirep;

· ericmjl opened on Aug 18, 2020