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Merge pull request #82 from ondrej-sladky-eligo/master #12

Merge pull request #82 from ondrej-sladky-eligo/master

Merge pull request #82 from ondrej-sladky-eligo/master #12

Workflow file for this run

name: build
on: [push]
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.9
uses: actions/setup-python@v2
with:
python-version: "3.9"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install --upgrade pytest pytest-cov coveralls
sudo apt-get install ncbi-blast+ bowtie
- name: Install
run: |
pip install -e .[reports,tests]
- name: Test with pytest
run: |
python -m pytest --cov dnachisel --cov-report term-missing
- name: Coveralls
run: coveralls
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_SERVICE_NAME: github