SIRF-Recon and Registration

• RTA_EPI: Reconstruct-Transform-Average EPI-based

• RTA_NAC: Reconstruct-Transform-Average NAC-based

• Reg_Nifty: Registration with NiftyReg -> outputs TM and absolute displacement values

• crerate_epi_nii.sh: convert .dcm files to .nii (needs ODIN)

• motion_simu.py includes the possibility to perform a motion

• reg_spm_NAC.py uses SPM for registration of NACs

• reg_spm_NAC_EPI.py registration of NACs in EPI space

• reg_spm_NAC_UTE.py registration of NACs in UTE space

• reg_spm_epi.py uses SPM for registration of EPIs

• sirf_recon_resample.py includes NiftyReg: resampling based on external transformation matrices

• sirf_recon_spm_rta.py includes SPM for registration, RTA: Reconstruct-Transform-Add