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Welcome to the RetinaSegmentation-HEx wiki!

Table of contents

• Setup
• To Do's
• Team Meetings Notes
• FAQ

Setup

• Install sofware dependencies that are mention in the Technologies
  • Install the next libraries in python:
    • Glob
    • cv2
    • logging
    • time
• First create a file name main.cfg in the next route /code/main.cfg. The first line of the location of the test folder images in your local machine and the second is the trainning.

TO DO's

Coding

• Pre-processing of Images Edwing
• Ingesting Raw Images
• Green Channel Splitting
• Applied CLAHE
• Denoising image with Non-Local Means
• Inverting Images
• Vein and Arteries Extraction Edwing
• Extraction of Hard Exodus Carmen
• Extraction of Soft Exodus Jaquie
• Machine Learning (Gray box) Taibur
• Evaluation of our work and printing of Results Taibur

Documentation

• Start with the State of the Art.
• Introduction and Obejtives.
• Decide on format and Star the document.

Research

• Evaluate which MAchine Learning tool to use
• How to evaluate or model
• Difference between Hard and Soft

Team Meetings Notes

Mar-29-2023 (Initial team meeting)

1. All team members will research about the subject.
2. Research the Medical Aspect of the Exodus
3. Nest Reunion will be in the 5th of April
4. Assign Task.
5. Ask about the unicasML to the professor.

Apr-05-2023 (Next Meeting)

FAQ

How to log in our project?

The logging capabilty pf pur project is to get a runtime history of the code and help us on debuging code. The file should be cretaed in the next structure:

• /code/03282023-124502.log

Each time that you run the main.py a file is created under the code folder. The name of the file has the next structure:

• month+day+year-hour+minute+second.log

You don't need to install a library for this is a build in fucntion of vanilla python.

You can use the next function to log your functions

Logging function	Use
logging.debug("Debug logging test...")	Use this one to mark the flow of our program.
logging.info("Program is working as expected")	Use when you make a change to the images, to see if they affect all the images
logging.warning("Warning, the program may not function properly")	No use so far
logging.error("The program encountered an error")	No use so far
logging.critical("The program crashed")	No use so far

How to make commits from terminal to this repository

The first stepp is to setup your ssh key with github follow this tutorial: SSH Tutorial

After that you need to setup your credentials in your local github instalation, Same ones as your github account

• Change the email and username to the ones that you have in github with:

  1. Open your terminal and navigate to your git repository.
  2. Change Git user name by running: git config --global user.name “Your Name”
  3. Change Git user email by running: git config --global user.email “name@email.com”
  4. Check the config with:
     • git config --list

• After that you are ready for making your first commit, navigate to your local copy of this project:

  1. Check the status of your changes with git status
     • if the files are in red : are changes,but not staged
     • if the files are in green : are changes in staged
     • you wnat the files in green since only the changes in the staged will be commited to the repository.
  2. Add the files to the stagged are with add [file name]or add all files with add *
  3. Check again Status.
  4. Prepare the commit with commit -m "[Add message]"
     • Please be as specific with the changes, updates or what are you committing
  5. Pull lastest change to avoid merging problems with git pull
  6. push your changes with git push

If you fell confortable on using branches, please remeber to merge them to the main one