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Releases: Ecogenomics/CheckM

v1.2.4

12 Jun 23:35

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  • fixed issue with prodigal not trying the meta model for failed genomes (fix provided by noelle-haddad)
  • added Dockerfile provided by Louis-MG

v1.2.3

25 Jun 20:51

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  • changes to support numpy 2.0
  • better handling of non-zero return codes from external programs

v1.2.2

31 Oct 13:53

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  • support gzipped protein files as input (thanks to alienzj for the PR)

v1.2.1

03 Aug 22:30

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  • renamed private classes to resolve multiprocessing AttributeError (thanks to misialq for the PR!)

v1.2.0

30 Apr 17:46

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  • modified how bin IDs are identified to improve output tables when processing compressed files (e.g. output bin ID will be my_bin instead of my_bin.fna)

v1.1.11

24 Apr 15:18

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  • fixed error with inverse_transformed being deprecated in newer versions of Matplotlib
  • updated minimum required version of Python packages

v1.1.10

21 Apr 22:42

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  • fixed bug with missing bCalledGenes flag that was impacting a number of commands

v1.1.9

14 Apr 19:43

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  • fixed support for gzip input FASTA files

v1.1.8

10 Apr 15:06

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  • updated setup.py to include long description and fix PyPi URL

v1.1.7

10 Apr 14:54

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  • added Jie Zhu's (alienzj) PR to allow input files to be specified via a file
  • added Jeremy Jacobson's (jjacobson95) PR to fix prettytable import issue
  • added fix by Jie Li (jili6t) regarding more stringent matching of bin extensions