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EarthSciML · May 25, 2024 · 20097a9 · 20097a9
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diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
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-{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-05T17:07:52","documenter_version":"1.3.0"}}
+{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-05-25T14:42:37","documenter_version":"1.4.1"}}
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diff --git a/dev/dry_deposition/4ac84091.svg → dev/dry_deposition/3c6e26c1.svg b/dev/dry_deposition/4ac84091.svg → dev/dry_deposition/3c6e26c1.svg
diff --git a/dev/dry_deposition/6fe80976.svg → dev/dry_deposition/aaef66e5.svg b/dev/dry_deposition/6fe80976.svg → dev/dry_deposition/aaef66e5.svg
diff --git a/dev/dry_deposition/index.html b/dev/dry_deposition/index.html
@@ -10,11 +10,11 @@
 tspan = (0.0, 3600*24) 
 u0 = [2.0,10.0,5,5,2.34,0.15] # initial concentrations of SO₂, O₃, NO₂, NO, H₂O₂, CH₂O
 sol = solve(ODEProblem(sys, u0, tspan, []),AutoTsit5(Rosenbrock23()), saveat=10.0) # default parameters</code></pre><p>which we can plot as</p><pre><code class="language-julia hljs">using Plots
-plot(sol, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;, legend=:outerright)</code></pre><img src="6fe80976.svg" alt="Example block output"/><h2 id="Parameters"><a class="docs-heading-anchor" href="#Parameters">Parameters</a><a id="Parameters-1"></a><a class="docs-heading-anchor-permalink" href="#Parameters" title="Permalink"></a></h2><p>The parameters in the model are:</p><pre><code class="language-julia hljs">parameters(sys) # [z, z₀, u_star, L, ρA, G, T, θ]</code></pre><p>where <code>z</code> is the top of the surface layer [m], <code>z₀</code> is the roughness length [m], <code>u_star</code> is friction velocity [m/s], and <code>L</code> is Monin-Obukhov length [m], <code>ρA</code> is air density [kg/m3], <code>T</code> is surface air temperature [K], <code>G</code> is solar irradiation [W m-2], <code>Θ</code> is the slope of the local terrain [radians].</p><p>Let&#39;s run some simulation with different value for parameter <code>z</code>. </p><pre><code class="language-julia hljs">@unpack O3 = sys
+plot(sol, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;, legend=:outerright)</code></pre><img src="aaef66e5.svg" alt="Example block output"/><h2 id="Parameters"><a class="docs-heading-anchor" href="#Parameters">Parameters</a><a id="Parameters-1"></a><a class="docs-heading-anchor-permalink" href="#Parameters" title="Permalink"></a></h2><p>The parameters in the model are:</p><pre><code class="language-julia hljs">parameters(sys) # [z, z₀, u_star, L, ρA, G, T, θ]</code></pre><p>where <code>z</code> is the top of the surface layer [m], <code>z₀</code> is the roughness length [m], <code>u_star</code> is friction velocity [m/s], and <code>L</code> is Monin-Obukhov length [m], <code>ρA</code> is air density [kg/m3], <code>T</code> is surface air temperature [K], <code>G</code> is solar irradiation [W m-2], <code>Θ</code> is the slope of the local terrain [radians].</p><p>Let&#39;s run some simulation with different value for parameter <code>z</code>. </p><pre><code class="language-julia hljs">@unpack O3 = sys
 
 p1 = [50,0.04,0.44,0,1.2,300,298,0]
 p2 = [10,0.04,0.44,0,1.2,300,298,0]
 sol1 = solve(ODEProblem(sys, u0, tspan, p1),AutoTsit5(Rosenbrock23()), saveat=10.0)
 sol2 = solve(ODEProblem(sys, u0, tspan, p2),AutoTsit5(Rosenbrock23()), saveat=10.0)
 
-plot([sol1[O3],sol2[O3]], label = [&quot;z=50m&quot; &quot;z=10m&quot;], title = &quot;Change of O3 concentration due to dry deposition&quot;, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;)</code></pre><img src="4ac84091.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../wesley1989/">Wesley »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 5 April 2024 17:07">Friday 5 April 2024</span>. Using Julia version 1.10.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot([sol1[O3],sol2[O3]], label = [&quot;z=50m&quot; &quot;z=10m&quot;], title = &quot;Change of O3 concentration due to dry deposition&quot;, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;)</code></pre><img src="3c6e26c1.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../wesley1989/">Wesley »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Saturday 25 May 2024 14:42">Saturday 25 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
diff --git a/dev/emep/f4c0ec5f.svg → dev/emep/1bdb9fb4.svg b/dev/emep/f4c0ec5f.svg → dev/emep/1bdb9fb4.svg
diff --git a/dev/emep/fde85a7c.svg → dev/emep/6e2fb85f.svg b/dev/emep/fde85a7c.svg → dev/emep/6e2fb85f.svg
diff --git a/dev/emep/b452d6f2.svg → dev/emep/cfadf490.svg b/dev/emep/b452d6f2.svg → dev/emep/cfadf490.svg
diff --git a/dev/emep/index.html b/dev/emep/index.html
@@ -11,16 +11,16 @@
 u0 = [2.0,10.0,5,1400,275,50,0.15]  # initial concentration of SO₂, O₃, NO₂, CH₄, CO, DMS, ISOP
 prob = ODEProblem(sys, u0, tspan, [])
 sol = solve(prob,AutoTsit5(Rosenbrock23()), saveat=10.0) # default parameters</code></pre><p>which we can plot as</p><pre><code class="language-julia hljs">using Plots
-plot(sol, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;, legend=:outerright)</code></pre><img src="fde85a7c.svg" alt="Example block output"/><h2 id="Parameters"><a class="docs-heading-anchor" href="#Parameters">Parameters</a><a id="Parameters-1"></a><a class="docs-heading-anchor-permalink" href="#Parameters" title="Permalink"></a></h2><p>The parameters in the model are:</p><pre><code class="language-julia hljs">parameters(sys) # [cloudFrac, qrain, ρ_air, Δz]</code></pre><p>where <code>cloudFrac</code> is fraction of grid cell covered by clouds, <code>qrain</code> is rain mixing ratio, <code>ρ_air</code> is air density [kg/m3], and <code>Δz</code> is fall distance [m].</p><p>Let&#39;s run some simulation with different value for parameter <code>cloudFrac</code>. </p><pre><code class="language-julia hljs">@unpack O3 = sys
+plot(sol, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;, legend=:outerright)</code></pre><img src="6e2fb85f.svg" alt="Example block output"/><h2 id="Parameters"><a class="docs-heading-anchor" href="#Parameters">Parameters</a><a id="Parameters-1"></a><a class="docs-heading-anchor-permalink" href="#Parameters" title="Permalink"></a></h2><p>The parameters in the model are:</p><pre><code class="language-julia hljs">parameters(sys) # [cloudFrac, qrain, ρ_air, Δz]</code></pre><p>where <code>cloudFrac</code> is fraction of grid cell covered by clouds, <code>qrain</code> is rain mixing ratio, <code>ρ_air</code> is air density [kg/m3], and <code>Δz</code> is fall distance [m].</p><p>Let&#39;s run some simulation with different value for parameter <code>cloudFrac</code>. </p><pre><code class="language-julia hljs">@unpack O3 = sys
 
 p1 = [0.3,0.5,1.204,200]
 p2 = [0.6,0.5,1.204,200]
 sol1 = solve(ODEProblem(sys, u0, tspan, p1),AutoTsit5(Rosenbrock23()), saveat=10.0)
 sol2 = solve(ODEProblem(sys, u0, tspan, p2),AutoTsit5(Rosenbrock23()), saveat=10.0)
 
-plot([sol1[O3],sol2[O3]], label = [&quot;cloudFrac=0.3&quot; &quot;cloudFrac=0.6&quot;], title = &quot;Change of O3 concentration due to wet deposition&quot;, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;)</code></pre><img src="f4c0ec5f.svg" alt="Example block output"/><p>From the plot we could see that with larger cloud fraction, the wet deposition rate increases. </p><p>Let&#39;s run some simulation with different value for parameter <code>qrain</code> </p><pre><code class="language-julia hljs">p3 = [0.5,0.3,1.204,200]
+plot([sol1[O3],sol2[O3]], label = [&quot;cloudFrac=0.3&quot; &quot;cloudFrac=0.6&quot;], title = &quot;Change of O3 concentration due to wet deposition&quot;, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;)</code></pre><img src="1bdb9fb4.svg" alt="Example block output"/><p>From the plot we could see that with larger cloud fraction, the wet deposition rate increases. </p><p>Let&#39;s run some simulation with different value for parameter <code>qrain</code> </p><pre><code class="language-julia hljs">p3 = [0.5,0.3,1.204,200]
 p4 = [0.5,0.6,1.204,200]
 sol3 = solve(ODEProblem(sys, u0, tspan, p3),AutoTsit5(Rosenbrock23()), saveat=10.0)
 sol4 = solve(ODEProblem(sys, u0, tspan, p4),AutoTsit5(Rosenbrock23()), saveat=10.0)
 
-plot([sol3[O3],sol4[O3]], label = [&quot;cloudFrac=0.3&quot; &quot;cloudFrac=0.6&quot;], title = &quot;Change of O3 concentration due to wet deposition&quot;, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;)</code></pre><img src="b452d6f2.svg" alt="Example block output"/><p>The graph indicates that an increase in the rain mixing ratio leads to a corresponding rise in the rate of wet deposition.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../wesley1989/">« Wesley</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 5 April 2024 17:07">Friday 5 April 2024</span>. Using Julia version 1.10.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot([sol3[O3],sol4[O3]], label = [&quot;cloudFrac=0.3&quot; &quot;cloudFrac=0.6&quot;], title = &quot;Change of O3 concentration due to wet deposition&quot;, xlabel=&quot;Time (second)&quot;, ylabel=&quot;concentration (ppb)&quot;)</code></pre><img src="cfadf490.svg" alt="Example block output"/><p>The graph indicates that an increase in the rain mixing ratio leads to a corresponding rise in the rate of wet deposition.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../wesley1989/">« Wesley</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Saturday 25 May 2024 14:42">Saturday 25 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>