replace mamba-forge with miniconda etc #85
Workflow file for this run
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name: CI | |
on: | |
push: | |
branches: [main] | |
tags: ['**'] | |
paths-ignore: | |
- '**/*.md' | |
pull_request: {branches: [main]} | |
defaults: {run: {shell: 'bash -el {0}'}} # https://github.com/marketplace/actions/setup-miniconda#important | |
env: | |
YARDL_VERSION: 0.6.2 | |
jobs: | |
validate: | |
strategy: | |
matrix: | |
cppVersion: [17] | |
environment: pypi | |
permissions: {id-token: write} | |
name: Validate Python and C++${{ matrix.cppVersion }} | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: {submodules: recursive} | |
- name: strip environment.yml | |
run: | | |
cat environment.yml | grep -v "#.*\<\local\>" > temp-ci-environment.yml | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
activate-environment: yardl | |
environment-file: temp-ci-environment.yml | |
- name: Install yardl | |
run: | | |
rm temp-ci-environment.yml | |
gh release download -R microsoft/yardl -p '*linux_x86_64.tar.gz' v$YARDL_VERSION | |
mkdir yardl | |
tar -xzf "yardl_${YARDL_VERSION}_linux_x86_64.tar.gz" -C yardl | |
rm "yardl_${YARDL_VERSION}_linux_x86_64.tar.gz" | |
echo "$PWD/yardl" >> "$GITHUB_PATH" | |
env: | |
GH_TOKEN: ${{ github.token }} | |
- name: Build model | |
run: | | |
cd model | |
yardl generate | |
- name: Python | |
run: | | |
cd python | |
python petsird_generator.py | python petsird_analysis.py | |
- name: cpp | |
run: | | |
mkdir cpp/build | |
cd cpp/build | |
cmake -G Ninja -S .. -DHDF5_ROOT="$CONDA_PREFIX" | |
ninja | |
./petsird_generator test.h5 | |
./petsird_analysis test.h5 | |
- uses: casperdcl/deploy-pypi@v2 | |
with: | |
build: python -o dist | |
upload: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }} | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: python-petsird | |
path: dist/** |