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EIT-ALIVE · Jun 4, 2024 · 5981f81 · 5981f81
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diff --git a/_modules/eitprocessing/datahandling/loading.html b/_modules/eitprocessing/datahandling/loading.html
@@ -119,10 +119,10 @@ <h1>Source code for eitprocessing.datahandling.loading</h1><div class="highlight
             <span class="n">max_frames</span><span class="o">=</span><span class="n">max_frames</span><span class="p">,</span>
         <span class="p">)</span>
 
-        <span class="n">eit_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;eit_collection&quot;</span><span class="p">])</span>
-        <span class="n">continuous_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;continuous_collection&quot;</span><span class="p">])</span>
-        <span class="n">sparse_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;sparse_collection&quot;</span><span class="p">])</span>
-        <span class="n">interval_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;interval_collection&quot;</span><span class="p">])</span>
+        <span class="n">eit_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;eitdata_collection&quot;</span><span class="p">])</span>
+        <span class="n">continuous_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;continuousdata_collection&quot;</span><span class="p">])</span>
+        <span class="n">sparse_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;sparsedata_collection&quot;</span><span class="p">])</span>
+        <span class="n">interval_datasets</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">loaded_data</span><span class="p">[</span><span class="s2">&quot;intervaldata_collection&quot;</span><span class="p">])</span>
 
     <span class="k">return</span> <span class="n">Sequence</span><span class="p">(</span>
         <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">,</span>

diff --git a/_modules/eitprocessing/datahandling/loading/draeger.html b/_modules/eitprocessing/datahandling/loading/draeger.html
@@ -148,17 +148,17 @@ <h1>Source code for eitprocessing.datahandling.loading.draeger</h1><div class="h
         <span class="n">label</span><span class="o">=</span><span class="s2">&quot;raw&quot;</span><span class="p">,</span>
         <span class="n">pixel_impedance</span><span class="o">=</span><span class="n">pixel_impedance</span><span class="p">,</span>
     <span class="p">)</span>
-    <span class="n">eit_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">EITData</span><span class="p">,</span> <span class="n">raw</span><span class="o">=</span><span class="n">eit_data</span><span class="p">)</span>
+    <span class="n">eitdata_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">EITData</span><span class="p">,</span> <span class="n">raw</span><span class="o">=</span><span class="n">eit_data</span><span class="p">)</span>
 
     <span class="p">(</span>
-        <span class="n">continuous_collection</span><span class="p">,</span>
-        <span class="n">sparse_collection</span><span class="p">,</span>
+        <span class="n">continuousdata_collection</span><span class="p">,</span>
+        <span class="n">sparsedata_collection</span><span class="p">,</span>
     <span class="p">)</span> <span class="o">=</span> <span class="n">_convert_medibus_data</span><span class="p">(</span><span class="n">medibus_data</span><span class="p">,</span> <span class="n">time</span><span class="p">)</span>
-    <span class="n">interval_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">IntervalData</span><span class="p">)</span>
+    <span class="n">intervaldata_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">IntervalData</span><span class="p">)</span>
     <span class="c1"># TODO: move some medibus data to sparse / interval</span>
     <span class="c1"># TODO: move phases and events to sparse / interval</span>
 
-    <span class="n">continuous_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
+    <span class="n">continuousdata_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
         <span class="n">ContinuousData</span><span class="p">(</span>
             <span class="n">label</span><span class="o">=</span><span class="s2">&quot;global_impedance_(raw)&quot;</span><span class="p">,</span>
             <span class="n">name</span><span class="o">=</span><span class="s2">&quot;Global impedance (raw)&quot;</span><span class="p">,</span>
@@ -169,7 +169,7 @@ <h1>Source code for eitprocessing.datahandling.loading.draeger</h1><div class="h
             <span class="n">values</span><span class="o">=</span><span class="n">eit_data</span><span class="o">.</span><span class="n">calculate_global_impedance</span><span class="p">(),</span>
         <span class="p">),</span>
     <span class="p">)</span>
-    <span class="n">sparse_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
+    <span class="n">sparsedata_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
         <span class="n">SparseData</span><span class="p">(</span>
             <span class="n">label</span><span class="o">=</span><span class="s2">&quot;minvalues_(draeger)&quot;</span><span class="p">,</span>
             <span class="n">name</span><span class="o">=</span><span class="s2">&quot;Minimum values detected by Draeger device.&quot;</span><span class="p">,</span>
@@ -179,7 +179,7 @@ <h1>Source code for eitprocessing.datahandling.loading.draeger</h1><div class="h
             <span class="n">time</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">t</span> <span class="k">for</span> <span class="n">t</span><span class="p">,</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">phases</span> <span class="k">if</span> <span class="n">d</span> <span class="o">==</span> <span class="o">-</span><span class="mi">1</span><span class="p">]),</span>
         <span class="p">),</span>
     <span class="p">)</span>
-    <span class="n">sparse_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
+    <span class="n">sparsedata_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
         <span class="n">SparseData</span><span class="p">(</span>
             <span class="n">label</span><span class="o">=</span><span class="s2">&quot;maxvalues_(draeger)&quot;</span><span class="p">,</span>
             <span class="n">name</span><span class="o">=</span><span class="s2">&quot;Maximum values detected by Draeger device.&quot;</span><span class="p">,</span>
@@ -195,7 +195,7 @@ <h1>Source code for eitprocessing.datahandling.loading.draeger</h1><div class="h
         <span class="n">events</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">events_</span><span class="p">)</span>
     <span class="k">else</span><span class="p">:</span>
         <span class="n">time</span><span class="p">,</span> <span class="n">events</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([]),</span> <span class="p">[]</span>
-    <span class="n">sparse_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
+    <span class="n">sparsedata_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
         <span class="n">SparseData</span><span class="p">(</span>
             <span class="n">label</span><span class="o">=</span><span class="s2">&quot;events_(draeger)&quot;</span><span class="p">,</span>
             <span class="n">name</span><span class="o">=</span><span class="s2">&quot;Events loaded from Draeger data&quot;</span><span class="p">,</span>
@@ -208,10 +208,10 @@ <h1>Source code for eitprocessing.datahandling.loading.draeger</h1><div class="h
     <span class="p">)</span>
 
     <span class="k">return</span> <span class="p">{</span>
-        <span class="s2">&quot;eit_collection&quot;</span><span class="p">:</span> <span class="n">eit_collection</span><span class="p">,</span>
-        <span class="s2">&quot;continuous_collection&quot;</span><span class="p">:</span> <span class="n">continuous_collection</span><span class="p">,</span>
-        <span class="s2">&quot;sparse_collection&quot;</span><span class="p">:</span> <span class="n">sparse_collection</span><span class="p">,</span>
-        <span class="s2">&quot;interval_collection&quot;</span><span class="p">:</span> <span class="n">interval_collection</span><span class="p">,</span>
+        <span class="s2">&quot;eitdata_collection&quot;</span><span class="p">:</span> <span class="n">eitdata_collection</span><span class="p">,</span>
+        <span class="s2">&quot;continuousdata_collection&quot;</span><span class="p">:</span> <span class="n">continuousdata_collection</span><span class="p">,</span>
+        <span class="s2">&quot;sparsedata_collection&quot;</span><span class="p">:</span> <span class="n">sparsedata_collection</span><span class="p">,</span>
+        <span class="s2">&quot;intervaldata_collection&quot;</span><span class="p">:</span> <span class="n">intervaldata_collection</span><span class="p">,</span>
     <span class="p">}</span></div>
 
 
@@ -222,8 +222,8 @@ <h1>Source code for eitprocessing.datahandling.loading.draeger</h1><div class="h
     <span class="n">medibus_data</span><span class="p">:</span> <span class="n">NDArray</span><span class="p">,</span>
     <span class="n">time</span><span class="p">:</span> <span class="n">NDArray</span><span class="p">,</span>
 <span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">tuple</span><span class="p">[</span><span class="n">DataCollection</span><span class="p">,</span> <span class="n">DataCollection</span><span class="p">]:</span>
-    <span class="n">continuous_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">ContinuousData</span><span class="p">)</span>
-    <span class="n">sparse_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">SparseData</span><span class="p">)</span>
+    <span class="n">continuousdata_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">ContinuousData</span><span class="p">)</span>
+    <span class="n">sparsedata_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">SparseData</span><span class="p">)</span>
 
     <span class="k">for</span> <span class="n">field_info</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">_medibus_fields</span><span class="p">,</span> <span class="n">medibus_data</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">field_info</span><span class="o">.</span><span class="n">continuous</span><span class="p">:</span>
@@ -237,13 +237,13 @@ <h1>Source code for eitprocessing.datahandling.loading.draeger</h1><div class="h
                 <span class="n">category</span><span class="o">=</span><span class="n">field_info</span><span class="o">.</span><span class="n">signal_name</span><span class="p">,</span>
             <span class="p">)</span>
             <span class="n">continuous_data</span><span class="o">.</span><span class="n">lock</span><span class="p">()</span>
-            <span class="n">continuous_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">continuous_data</span><span class="p">)</span>
+            <span class="n">continuousdata_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">continuous_data</span><span class="p">)</span>
 
         <span class="k">else</span><span class="p">:</span>
             <span class="c1"># TODO parse sparse data</span>
             <span class="o">...</span>
 
-    <span class="k">return</span> <span class="n">continuous_collection</span><span class="p">,</span> <span class="n">sparse_collection</span></div>
+    <span class="k">return</span> <span class="n">continuousdata_collection</span><span class="p">,</span> <span class="n">sparsedata_collection</span></div>
 
 
 

diff --git a/_modules/eitprocessing/datahandling/loading/sentec.html b/_modules/eitprocessing/datahandling/loading/sentec.html
@@ -73,7 +73,7 @@ <h1>Source code for eitprocessing.datahandling.loading.sentec</h1><div class="hi
 
 <div class="viewcode-block" id="load_from_single_path">
 <a class="viewcode-back" href="../../../../autoapi/eitprocessing/datahandling/loading/sentec/index.html#eitprocessing.datahandling.loading.sentec.load_from_single_path">[docs]</a>
-<span class="k">def</span> <span class="nf">load_from_single_path</span><span class="p">(</span>  <span class="c1"># noqa: C901, PLR0912</span>
+<span class="k">def</span> <span class="nf">load_from_single_path</span><span class="p">(</span>  <span class="c1"># noqa: C901</span>
     <span class="n">path</span><span class="p">:</span> <span class="n">Path</span><span class="p">,</span>
     <span class="n">framerate</span><span class="p">:</span> <span class="nb">float</span> <span class="o">|</span> <span class="kc">None</span> <span class="o">=</span> <span class="mf">50.2</span><span class="p">,</span>
     <span class="n">first_frame</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
@@ -156,8 +156,8 @@ <h1>Source code for eitprocessing.datahandling.loading.sentec</h1><div class="hi
     <span class="k">if</span> <span class="ow">not</span> <span class="n">framerate</span><span class="p">:</span>
         <span class="n">framerate</span> <span class="o">=</span> <span class="n">SENTEC_FRAMERATE</span>
 
-    <span class="n">eit_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">EITData</span><span class="p">)</span>
-    <span class="n">eit_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
+    <span class="n">eitdata_collection</span> <span class="o">=</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">EITData</span><span class="p">)</span>
+    <span class="n">eitdata_collection</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
         <span class="n">EITData</span><span class="p">(</span>
             <span class="n">vendor</span><span class="o">=</span><span class="n">Vendor</span><span class="o">.</span><span class="n">SENTEC</span><span class="p">,</span>
             <span class="n">path</span><span class="o">=</span><span class="n">path</span><span class="p">,</span>
@@ -170,10 +170,10 @@ <h1>Source code for eitprocessing.datahandling.loading.sentec</h1><div class="hi
     <span class="p">)</span>
 
     <span class="k">return</span> <span class="p">{</span>
-        <span class="s2">&quot;eit_collection&quot;</span><span class="p">:</span> <span class="n">eit_collection</span><span class="p">,</span>
-        <span class="s2">&quot;continuous_collection&quot;</span><span class="p">:</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">ContinuousData</span><span class="p">),</span>
-        <span class="s2">&quot;sparse_collection&quot;</span><span class="p">:</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">SparseData</span><span class="p">),</span>
-        <span class="s2">&quot;interval_collection&quot;</span><span class="p">:</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">IntervalData</span><span class="p">),</span>
+        <span class="s2">&quot;eitdata_collection&quot;</span><span class="p">:</span> <span class="n">eitdata_collection</span><span class="p">,</span>
+        <span class="s2">&quot;continuousdata_collection&quot;</span><span class="p">:</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">ContinuousData</span><span class="p">),</span>
+        <span class="s2">&quot;sparsedata_collection&quot;</span><span class="p">:</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">SparseData</span><span class="p">),</span>
+        <span class="s2">&quot;intervaldata_collection&quot;</span><span class="p">:</span> <span class="n">DataCollection</span><span class="p">(</span><span class="n">IntervalData</span><span class="p">),</span>
     <span class="p">}</span></div>