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Description
When executing the sql server check mapping_completeness.sql inside the R function cdmInspection I get following error:
No column name was specified for column 1 of 'T'.
The observation table I use does have a lot of records but the column "value_as_concept_id" is always NULL.
select 'Observation value', count_big(*),
sum(is_mapped),
100.0*sum(is_mapped) / count_big(*),
sum(num_records),
sum(case when is_mapped > 0 then num_records else 0 end),
100.0*sum(case when is_mapped > 0 then num_records else 0 end)/sum(num_records)
from
(
select '', case when value_as_concept_id > 0 then 1 else 0 end as is_mapped, count_big(*) as num_records
from @cdmDatabaseSchema.observation
where value_as_concept_id IS NOT NULL
group by case when value_as_concept_id > 0 then 1 else 0 end
) T
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