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Merge pull request #239 from tcezard/conda_install
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Add description of conda installation
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tcezard authored Mar 11, 2024
2 parents a88dcf2 + de36a11 commit b1d57e5
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11 changes: 9 additions & 2 deletions README.md
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## Installation

### From Binaries

The vcf-validator is built with all the dependencies included. It can be downloaded directly from the [latest release](https://github.com/EBIvariation/vcf-validator/releases) for the most stable experience using vcf-validator. Along with the release notes, you will find the executables `vcf_validator`, `vcf_assembly_checker` and `vcf_debugulator` for Linux, macOS and Windows. For Windows, please also download the libraries in the [lib/windows_specific/](https://github.com/EBIvariation/vcf-validator/tree/master/lib/windows_specific/) folder.

### From conda

Starting from [v0.9.6](https://github.com/EBIvariation/vcf-validator/releases/tag/v0.9.6), you can install vcf-validator via conda using

```
conda install -c bioconda vcf-validator
```

## Run

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* Clang 10
* GCC 9

NOTE: Currently the Linux compilation doesn't work in Ubuntu 18. We are working on fixing this. The Linux compilation is tested and working in Ubuntu 16.04 and 20.04.

#### Dependencies

Some dependencies have to be installed manually and others can be installed automatically. We recommend using the automatic install when possible.
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